View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_5 (Length: 473)
Name: NF20446_low_5
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 33814717 - 33814313
Alignment:
| Q |
16 |
atctgactgttgtttggttagagagtgaacaattggctactcagcttggctacaaatgttctcatgcatttcttgaggggaatatggttgcagacgcttt |
115 |
Q |
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| T |
33814717 |
atctgagtgttgtttggttagagagtgaacaattggctactcagcttggctacaaatgttctcatgcatttcttgaggggaatatggttgcggacgcttt |
33814618 |
T |
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| Q |
116 |
gacaaaaaa-cggacaggggttggctctttgcacatcacaatggtggaatgacccaccacagtttattctttctttgttaaatagagagcaaataggttt |
214 |
Q |
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| T |
33814617 |
ggcaaaaaaacggacaggggttggctctttgcacatcacaatggtggaatgacccaccacagtttattctttctttgttaaatagaaagcaaataggttt |
33814518 |
T |
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| Q |
215 |
acctttcactagattcactatgtaattcattgtacatatggtgcaggcctttcctgtttttaataccattcattgcttgatcnnnnnnntaatcagaaat |
314 |
Q |
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| T |
33814517 |
acctttcactagattcactatgtaattcattgtacatatggtgcaggcctttcctgtttttaataccattcattgcttgatcaaaa----aaatagaaat |
33814422 |
T |
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| Q |
315 |
atgtcctagtcttgtaagatatgtggtcactggcccttgtatctataacccaaagtataggattcttacacataagagtagaagagatgatgcatattga |
414 |
Q |
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| T |
33814421 |
atgtcctagtcttgtaagatatgtggtcactggcccttgtatctataacccaaagtatagcattcttacacataaaagtagaagagatgatgcatattga |
33814322 |
T |
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| Q |
415 |
attttggtt |
423 |
Q |
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| T |
33814321 |
attttggtt |
33814313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 33814300 - 33814260
Alignment:
| Q |
416 |
ttttggttataatctgtagacaagagtagcattccaatttt |
456 |
Q |
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| T |
33814300 |
ttttggttataatttgtagacaagagtagcattccaatttt |
33814260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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