View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_6 (Length: 439)
Name: NF20446_low_6
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 49265349 - 49265021
Alignment:
| Q |
22 |
gtgtgcaggtcaaaagtgttcttaaaaaccgtaagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagc |
121 |
Q |
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| T |
49265349 |
gtgtgcaggtcaaaagtgttcttaaaaaccgtaagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagc |
49265250 |
T |
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| Q |
122 |
agttgctattgctgcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccagaactgactca |
221 |
Q |
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| T |
49265249 |
agttgctattgcggcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccagaactgactca |
49265150 |
T |
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| Q |
222 |
tcacccaaattgaaaagatctatgatgattgagtgataagagtgatatttcaacatgggaaatgagcatcttagacccaaactctaaatatattacttca |
321 |
Q |
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| T |
49265149 |
tcacccaaattgaaaagatctatgatgattgagtgttaagagtgatatttcaacatgggaaatgagcatcttagacccaaactctaaatatattacttca |
49265050 |
T |
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| Q |
322 |
ttcagctaattaaagaaaattcatgacaa |
350 |
Q |
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| T |
49265049 |
ttcagctaattaaagaaaattcatgacaa |
49265021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Complemental strand, 49264971 - 49264937
Alignment:
| Q |
395 |
atactcgcatatgaaccaaggatttatagattcat |
429 |
Q |
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| T |
49264971 |
atactcgcatatgaactaaggatttatagattcat |
49264937 |
T |
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