View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_9 (Length: 372)
Name: NF20446_low_9
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 3084420 - 3084064
Alignment:
| Q |
15 |
cttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggattatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084420 |
cttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggattatc |
3084321 |
T |
|
| Q |
115 |
tgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3084320 |
tgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaattccactcaacatcagaagttgt |
3084221 |
T |
|
| Q |
215 |
gggctacctagtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
3084220 |
gggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactc |
3084121 |
T |
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| Q |
315 |
catgtgcaacaggccttgaatttgatctttctgtttaatatcatacaccatgcattc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084120 |
catgtgcaacaggccttgaatttgatctttctgtttaatatcatacaccatgcattc |
3084064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 3093300 - 3092992
Alignment:
| Q |
15 |
cttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggattatc |
114 |
Q |
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||||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||| ||||||||| ||||| |
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| T |
3093300 |
cttcaatatagctgccaaagctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatc |
3093201 |
T |
|
| Q |
115 |
tgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgt |
214 |
Q |
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|||||||||||||||||| || ||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093200 |
tgacattccttgtcctacaaatggttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgt |
3093101 |
T |
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| Q |
215 |
gggctacctagtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
3093100 |
gggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactc |
3093001 |
T |
|
| Q |
315 |
catgtgcaa |
323 |
Q |
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||||||||| |
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| T |
3093000 |
catgtgcaa |
3092992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 45939005 - 45938961
Alignment:
| Q |
100 |
gttcattggattatctgacattccttgtcctaccaaaggttgatc |
144 |
Q |
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||||||||||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
45939005 |
gttcattggattatctgccatcccttgacctaccaaaggctgatc |
45938961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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