View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20447_high_2 (Length: 361)
Name: NF20447_high_2
Description: NF20447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20447_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 47100825 - 47100497
Alignment:
| Q |
15 |
tatatagtattcacgtgttaattaatttaatctctcttttatcaaggtcattatttgggagnnnnnnntaagtttgtagactataagtctacatgtaatg |
114 |
Q |
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| T |
47100825 |
tatatagtattcacgtgttaattaatttaatctctcttttatcaagttcattatttgggagaaaaaaataagtttgtagactataagtctacatgtaatg |
47100726 |
T |
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| Q |
115 |
ggtgggtttccatcatttctaccatattgtataagtataacgtatttattaattttttaaaaatctcttttaagctgtaattgtaattgtagattcatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47100725 |
ggtgggtttccatcatttctaccatattgtataagtataacgtatttattaattttttaaaaatctcttttaagctgtaattgtaattgtagattcatgt |
47100626 |
T |
|
| Q |
215 |
ctgcccgatcaattaacttaaaagacatggacacctttaaaagaatgtaaacaaatattgtcaaagttcatgcaaagtgcactgcatgtcttttaattga |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47100625 |
ctgcccgatcaattaacttaaaaaacatggacacctttaaaagaatgtaaacaaatattgtcaaagttcatacaaagtgcactgcatgtcttttaattga |
47100526 |
T |
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| Q |
315 |
gataaaggagtataactcatgacattatg |
343 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47100525 |
gataaaggagtataactcatgacattatg |
47100497 |
T |
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