View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20447_low_1 (Length: 492)
Name: NF20447_low_1
Description: NF20447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20447_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 3321123 - 3321583
Alignment:
| Q |
19 |
atggcttcaaattggtgaagagaaaaagtatacagtgaatcaaaaaattcttgatcaagcgttacatgaaaaaatcgaatccaaaagaaaaatacaaggc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3321123 |
atggcttcaaattggtgaagagaaaaagtatacagagaatcaaaaaattcttgatcaagcgttatatgaaaaaatcgaatccaaaagaaaaatacaaggc |
3321222 |
T |
|
| Q |
119 |
caacaacaatttgacgtgataaacgcccttatgaatgaaatgagagatggaaaatatccaatagatgacaagtttctgaaagacacaacaattaatttac |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321223 |
caacaacaatttgacgtgataaacgcccttatgaatgaaatgaaagatggaaaagatccaatagatgacaagtttctgaaagacacaacaattaatttac |
3321322 |
T |
|
| Q |
219 |
tcgcagccgggacagacactattagttccggccttacttggtttttatggttggtcgcaacgcacccttttattgaagctaagattcttgaagagattaa |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
3321323 |
tcgcagccgggacagacactattagttctggccttacttggtttttatggctggtcgcgacgcacccttttgttgaagctaagattcttgaagagattaa |
3321422 |
T |
|
| Q |
319 |
agaaaatttaccatcaagagaaggtaattggaaatgtttaggaatagaaggtattaataagttggtttatctacatgcagctttgtgtgaatccttaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3321423 |
agaaaatttaccatcaagagaaggtaattggaaatgtttaggaatagaaggtattaataagttggtttatctacatgcagctttatgtgaatccttaaga |
3321522 |
T |
|
| Q |
419 |
ctttatccacctgtcccttttgagcataaatcttcattgaaaccagatgtacttcctagtg |
479 |
Q |
| |
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| T |
3321523 |
ctttatccacctgtcccttttgagcataaatcttcattaaaaccagatgtacttcctagtg |
3321583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 36668744 - 36668281
Alignment:
| Q |
19 |
atggcttcaaattggtgaagagaaaaagtatacagtgaatcaaaaaattcttgatcaagcgttacatgaaaaaatcgaatccaaaagaaaaatacaaggc |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||| |||| |||||| |||||||| |||| || | ||||| ||||||||||| ||| |||||| |
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| T |
36668744 |
atggcttcaagttggtgaagagaaaaagttttcagagaatattaaaattattgatcaatggttatattcagaaatcaaatccaaaagagaaacacaagga |
36668645 |
T |
|
| Q |
119 |
caacaacaatttgacgtgataaacgcccttatgaatgaaatgagagatggaaaatatccaatagatgacaagtttctgaaagacacaacaattaatttac |
218 |
Q |
| |
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|| ||||| ||||| || |||| |||||| | |||| | |||||||| || ||| || |||||||||||| ||| ||| || | |||||| ||| |
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| T |
36668644 |
cataaacaacttgacttgctaaatacccttacgtttgaagtaggagatggacaaaatctcattgatgacaagtttttgagagatacggcgattaatctac |
36668545 |
T |
|
| Q |
219 |
tcgcagccgggacagacactattagttccggccttacttggtttttatggttggtcgcaacgcacccttttattgaagctaagattcttgaagagattaa |
318 |
Q |
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| || || || | ||| ||||| ||||| | ||| ||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||||||||||| | | |
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| T |
36668544 |
ttgctgctggaagagatactataagttctgccctaacttggtttttctggttggtggcaacacacccttttgttgaagccaagattcttgaagaggtgag |
36668445 |
T |
|
| Q |
319 |
agaaaatttaccatcaagagaag---gtaattggaaatgtttaggaatagaaggtattaataagttggtttatctacatgcagctttgtgtgaatcctta |
415 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||||||| ||||| ||| ||||| |||||||||||| |||||| |||||| ||||| |
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| T |
36668444 |
agaaaatttatcatcaagagaagataataattggaaagatttaggaatggaagggcttagcaagttaatttatctacatggagctttatgtgaagcctta |
36668345 |
T |
|
| Q |
416 |
agactttatccacctgtcccttttgagcataaatcttcattgaaaccagatgtacttcctagtg |
479 |
Q |
| |
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|| ||||||||||| | |||||||||||||||||| |||||| | ||||| |||||||||| |
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| T |
36668344 |
aggctttatccaccaataccttttgagcataaatctaacttgaaatctgatgtgcttcctagtg |
36668281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 165 - 479
Target Start/End: Complemental strand, 12176268 - 12175954
Alignment:
| Q |
165 |
atggaaaatatccaatagatgacaagtttctgaaagacacaacaattaatttactcgcagccgggacagacactattagttccggccttacttggttttt |
264 |
Q |
| |
|
||||| || |||||||||| || ||||| ||| ||| ||| | |||||| |||| |||||||| | |||||||||||| || ||||||||||||||||| |
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|
| T |
12176268 |
atggagaaaatccaatagactacgagtttttgagagatacatcgattaatctacttgcagccggaagagacactattagctcgggccttacttggttttt |
12176169 |
T |
|
| Q |
265 |
atggttggtcgcaacgcacccttttattgaagctaagattcttgaagagattaaagaaaatttaccatcaagagaaggtaattggaaatgtttaggaata |
364 |
Q |
| |
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|||||||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||| | |
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|
| T |
12176168 |
ctggttggtggcaacacacccttttgttgaagccaagattcttgaagagatcaaagaaaatttaccatcaagagaacatagttggaaagatttaggagca |
12176069 |
T |
|
| Q |
365 |
gaaggtattaataagttggtttatctacatgcagctttgtgtgaatccttaagactttatccacctgtcccttttgagcataaatcttcattgaaaccag |
464 |
Q |
| |
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|||| ||| ||||| ||||| |||||| |||||| |||||| |||| || |||||||| || || ||||| ||||||||||| |||| ||| | | |
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|
| T |
12176068 |
aaagggcttagcaagttaatttatttacatggagctttatgtgaagccttgaggctttatcctccggttcctttagagcataaatcagcattaaaatctg |
12175969 |
T |
|
| Q |
465 |
atgtacttcctagtg |
479 |
Q |
| |
|
|||| |||||||||| |
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| T |
12175968 |
atgtgcttcctagtg |
12175954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 178 - 479
Target Start/End: Complemental strand, 12164730 - 12164429
Alignment:
| Q |
178 |
aatagatgacaagtttctgaaagacacaacaattaatttactcgcagccgggacagacactattagttccggccttacttggtttttatggttggtcgca |
277 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| |||| ||| |||| || ||||| | ||| || ||||| || ||||||||||||||||| |||||||| ||| |
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|
| T |
12164730 |
aatagatgacaagtttttgagagatacatcaatcaatctacttgctgccggaagagatacgattagctcgggccttacttggtttttctggttggtggca |
12164631 |
T |
|
| Q |
278 |
acgcacccttttattgaagctaagattcttgaagagattaaagaaaatttaccatcaagagaaggtaattggaaatgtttaggaatagaaggtattaata |
377 |
Q |
| |
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|| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||| | |||| ||| | |
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| T |
12164630 |
acacatcctttgattgaagctaagattcttgaagagatcaaagaaaatttaccatcaagagaacatagttggaaagatttaggagcaaaagggcttagca |
12164531 |
T |
|
| Q |
378 |
agttggtttatctacatgcagctttgtgtgaatccttaagactttatccacctgtcccttttgagcataaatcttcattgaaaccagatgtacttcctag |
477 |
Q |
| |
|
|||| |||||| |||||| |||||| |||||| |||| || |||||||| || | |||||||||||||||||| || |||| | ||||| |||||||| |
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|
| T |
12164530 |
agttagtttatttacatggagctttatgtgaagccttgaggctttatccgccgataccttttgagcataaatctgcacagaaatctgatgtgcttcctag |
12164431 |
T |
|
| Q |
478 |
tg |
479 |
Q |
| |
|
|| |
|
|
| T |
12164430 |
tg |
12164429 |
T |
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