View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20447_low_4 (Length: 204)
Name: NF20447_low_4
Description: NF20447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20447_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 7655742 - 7655569
Alignment:
| Q |
12 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
111 |
Q |
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| T |
7655742 |
tgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
7655643 |
T |
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| Q |
112 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgag |
185 |
Q |
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| T |
7655642 |
gactgcagggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaatagtccaaatgcatgag |
7655569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
83 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
168 |
Q |
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| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 52102974 - 52103147
Alignment:
| Q |
12 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
111 |
Q |
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| T |
52102974 |
tgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgt |
52103073 |
T |
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| Q |
112 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgag |
185 |
Q |
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| T |
52103074 |
gactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgag |
52103147 |
T |
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Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 23339615 - 23339455
Alignment:
| Q |
23 |
caagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggt |
122 |
Q |
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| T |
23339615 |
caagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggt |
23339516 |
T |
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| Q |
123 |
tcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatg |
183 |
Q |
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| T |
23339515 |
tgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatg |
23339455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
119 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
168 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
104 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
177 |
Q |
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| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
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