View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_high_15 (Length: 269)
Name: NF20448_high_15
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_high_15 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 33515 - 33755
Alignment:
| Q |
10 |
caataaaatgagaaactccatatcacattaaagaaagtggaaccataaatatacacatgcagaagacatcatcaaatgacatcacgggccctttctatcc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33515 |
caataaaatgagaaactccatatcacattaaagaaagtggaaccataaatatacacatgcagaagacatcatcaaatgacatcacgggccctttctatcc |
33614 |
T |
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| Q |
110 |
aaaaaagacatcacgggcccttgtcaaattagaaataaataaatcaaattacagacttacagcagcatgtgnnnnnnnctaaccaaaagttataacatgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33615 |
-aaaaagacatcacgggcccttgtcaaattagaaataaataaatcaaattacagacttacagcagcatgtgtttttttctaaccaaaagttataacatgt |
33713 |
T |
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| Q |
210 |
gttaaacattaacacttgtcttcaaatggagaaaggaagtta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33714 |
gttaaacattaacacttgtcttcaaatggagaaaggaagtta |
33755 |
T |
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