View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20448_high_16 (Length: 267)
Name: NF20448_high_16
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 4086387 - 4086220
Alignment:
| Q |
90 |
ggaatctagggtaatgtaatgtaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcat |
189 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4086387 |
ggaatctagggtaatgtaatttaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcat |
4086288 |
T |
|
| Q |
190 |
atatgataaaattaaggtgatctcatttcattttgagaattagtgttgctttgttgtccttttctgtg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4086287 |
atatgataaaattaaggtgatctcatttcattttgagaattagtgttgctttgttgtctttttctgtg |
4086220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 4084940 - 4084810
Alignment:
| Q |
127 |
gtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcatatatgataaaattaaggtgatctcatttcattttgag |
226 |
Q |
| |
|
|||||| ||||||| | |||||| |||| ||||||||| | ||| |||||||||||||||| || |||||||||| |||||||||| ||||| ||| |
|
|
| T |
4084940 |
gtgatacaaatagatatgttgatttttgtgtttttgttgtagtgtgtgtattggttgattcatgtaagataaaattagggtgatctcacatcattatgaa |
4084841 |
T |
|
| Q |
227 |
aattagtgttgctttgttgtccttttctgtg |
257 |
Q |
| |
|
||| | |||||||||||||| ||||||||| |
|
|
| T |
4084840 |
aatgatcgttgctttgttgtctttttctgtg |
4084810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 4086451 - 4086410
Alignment:
| Q |
31 |
tttgatttgtatgataagtcggtttagggttttagatttgca |
72 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4086451 |
tttgatttgtataataagtcggtttagggttttagatttgca |
4086410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 4085704 - 4085630
Alignment:
| Q |
105 |
gtaatgtaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattg |
179 |
Q |
| |
|
|||||||||||||| ||||| || |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
4085704 |
gtaatgtaatgagggtagttcggggatacaaatatggtttttgaatcttgtgtttttgttggaatgtgggtattg |
4085630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University