View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20448_high_2 (Length: 647)

Name: NF20448_high_2
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20448_high_2
NF20448_high_2
[»] chr1 (50 HSPs)
chr1 (18-635)||(12224308-12224943)
chr1 (18-172)||(12222126-12222278)
chr1 (260-361)||(31869625-31869727)
chr1 (260-369)||(44596548-44596658)
chr1 (260-359)||(23915606-23915706)
chr1 (260-369)||(15306524-15306634)
chr1 (260-369)||(35810749-35810859)
chr1 (260-369)||(45581007-45581117)
chr1 (282-358)||(20903959-20904036)
chr1 (260-368)||(21680656-21680765)
chr1 (260-359)||(28006381-28006481)
chr1 (280-362)||(3577722-3577805)
chr1 (266-360)||(45653440-45653534)
chr1 (279-357)||(51432149-51432228)
chr1 (260-369)||(42916113-42916223)
chr1 (260-368)||(14578585-14578694)
chr1 (260-368)||(24575940-24576049)
chr1 (260-368)||(25124885-25124994)
chr1 (260-368)||(50447372-50447481)
chr1 (260-369)||(42937105-42937215)
chr1 (261-361)||(14101895-14101996)
chr1 (260-368)||(15014346-15014455)
chr1 (260-376)||(29677511-29677628)
chr1 (260-368)||(46264944-46265053)
chr1 (268-368)||(47983294-47983395)
chr1 (261-368)||(7016075-7016183)
chr1 (484-563)||(23316277-23316356)
chr1 (260-369)||(30251455-30251566)
chr1 (271-368)||(7841665-7841762)
chr1 (260-369)||(39802766-39802876)
chr1 (260-332)||(51432239-51432312)
chr1 (260-359)||(7596424-7596524)
chr1 (279-362)||(31816618-31816702)
chr1 (260-358)||(5204479-5204578)
chr1 (260-370)||(15257169-15257280)
chr1 (260-362)||(15662980-15663083)
chr1 (271-368)||(7996013-7996111)
chr1 (268-369)||(36119110-36119212)
chr1 (266-361)||(19508565-19508661)
chr1 (282-336)||(11991325-11991380)
chr1 (376-431)||(44905256-44905311)
chr1 (260-369)||(47602861-47602971)
chr1 (280-336)||(14725362-14725419)
chr1 (260-368)||(23916841-23916950)
chr1 (262-368)||(6413272-6413379)
chr1 (266-368)||(27076515-27076618)
chr1 (260-369)||(24469816-24469926)
chr1 (260-316)||(20347697-20347754)
chr1 (260-368)||(32179889-32179998)
chr1 (260-371)||(7702866-7702978)
[»] chr4 (45 HSPs)
chr4 (376-563)||(38246124-38246311)
chr4 (260-368)||(11055226-11055335)
chr4 (260-368)||(22184534-22184643)
chr4 (260-362)||(27891418-27891520)
chr4 (260-368)||(52813632-52813741)
chr4 (260-359)||(26632967-26633067)
chr4 (265-369)||(38791728-38791832)
chr4 (260-359)||(51995109-51995209)
chr4 (260-364)||(36156298-36156403)
chr4 (260-368)||(56224176-56224285)
chr4 (278-370)||(9959381-9959473)
chr4 (260-369)||(12673027-12673137)
chr4 (260-369)||(13761830-13761940)
chr4 (259-359)||(4274565-4274666)
chr4 (260-367)||(19455159-19455267)
chr4 (260-351)||(48151143-48151235)
chr4 (260-359)||(50146927-50147027)
chr4 (375-536)||(46210682-46210843)
chr4 (283-369)||(43387311-43387398)
chr4 (262-368)||(46944544-46944651)
chr4 (269-368)||(49405635-49405735)
chr4 (260-368)||(9469808-9469917)
chr4 (273-369)||(51407948-51408045)
chr4 (271-362)||(9874214-9874306)
chr4 (260-367)||(34718170-34718278)
chr4 (260-299)||(6866173-6866212)
chr4 (260-370)||(48339097-48339208)
chr4 (260-368)||(80528-80637)
chr4 (268-371)||(9222129-9222231)
chr4 (260-368)||(36543812-36543921)
chr4 (260-371)||(15697080-15697192)
chr4 (279-358)||(16742346-16742426)
chr4 (260-359)||(40797861-40797961)
chr4 (273-368)||(55891985-55892081)
chr4 (283-369)||(28265672-28265759)
chr4 (260-368)||(32397698-32397807)
chr4 (319-368)||(48802475-48802524)
chr4 (260-307)||(7505560-7505608)
chr4 (260-327)||(43812098-43812166)
chr4 (260-299)||(25134605-25134644)
chr4 (260-369)||(48731172-48731282)
chr4 (260-368)||(13455732-13455841)
chr4 (266-299)||(52706254-52706287)
chr4 (263-299)||(25102667-25102703)
chr4 (279-362)||(28470869-28470952)
[»] chr3 (25 HSPs)
chr3 (260-369)||(9505120-9505230)
chr3 (260-368)||(52199460-52199569)
chr3 (260-359)||(28242614-28242714)
chr3 (260-359)||(52934843-52934943)
chr3 (260-358)||(1674660-1674759)
chr3 (260-370)||(33438729-33438840)
chr3 (260-369)||(25253733-25253843)
chr3 (260-368)||(12710733-12710842)
chr3 (260-368)||(54393443-54393552)
chr3 (260-368)||(30662131-30662240)
chr3 (268-369)||(19560773-19560875)
chr3 (268-368)||(38643546-38643647)
chr3 (260-368)||(39135385-39135494)
chr3 (271-367)||(55203066-55203165)
chr3 (268-358)||(30743611-30743702)
chr3 (260-299)||(46293283-46293322)
chr3 (260-369)||(39469530-39469640)
chr3 (260-368)||(39942800-39942909)
chr3 (260-359)||(20550211-20550311)
chr3 (260-359)||(26049549-26049649)
chr3 (128-182)||(20763160-20763214)
chr3 (260-368)||(40943592-40943701)
chr3 (129-182)||(20764181-20764234)
chr3 (263-359)||(45714730-45714827)
chr3 (260-359)||(28687103-28687203)
[»] chr5 (24 HSPs)
chr5 (260-368)||(1840687-1840796)
chr5 (260-362)||(19282120-19282223)
chr5 (260-370)||(27196108-27196219)
chr5 (266-362)||(31021900-31021997)
chr5 (260-370)||(3801362-3801473)
chr5 (268-368)||(32945021-32945122)
chr5 (271-358)||(39414224-39414312)
chr5 (266-368)||(41783362-41783465)
chr5 (260-368)||(2676047-2676156)
chr5 (260-369)||(20189004-20189114)
chr5 (266-334)||(14500740-14500809)
chr5 (266-369)||(15933200-15933304)
chr5 (260-299)||(20190654-20190693)
chr5 (260-299)||(38522931-38522970)
chr5 (282-368)||(40056363-40056450)
chr5 (280-368)||(10327981-10328070)
chr5 (260-368)||(10494016-10494125)
chr5 (266-334)||(26218084-26218153)
chr5 (268-368)||(27450581-27450682)
chr5 (117-184)||(13989010-13989075)
chr5 (329-368)||(28247511-28247550)
chr5 (263-369)||(31620902-31621009)
chr5 (268-368)||(5382825-5382926)
chr5 (268-368)||(34857386-34857487)
[»] chr8 (13 HSPs)
chr8 (260-369)||(3307965-3308075)
chr8 (261-358)||(32740671-32740769)
chr8 (268-368)||(9412524-9412625)
chr8 (266-359)||(43384831-43384925)
chr8 (260-327)||(23181186-23181254)
chr8 (260-368)||(33279977-33280086)
chr8 (266-334)||(43967547-43967616)
chr8 (262-337)||(9135985-9136061)
chr8 (260-359)||(34516169-34516269)
chr8 (260-299)||(27189152-27189191)
chr8 (269-379)||(39478090-39478201)
chr8 (266-368)||(12378389-12378492)
chr8 (260-316)||(24854630-24854687)
[»] chr2 (25 HSPs)
chr2 (260-368)||(3409188-3409297)
chr2 (260-359)||(44740492-44740592)
chr2 (260-362)||(24844672-24844775)
chr2 (260-358)||(17616298-17616397)
chr2 (260-369)||(27902438-27902548)
chr2 (260-365)||(41332262-41332368)
chr2 (260-368)||(27464572-27464681)
chr2 (260-359)||(20203723-20203823)
chr2 (260-362)||(17368996-17369098)
chr2 (273-369)||(29806950-29807047)
chr2 (260-324)||(38409615-38409680)
chr2 (260-368)||(40458952-40459061)
chr2 (260-362)||(11006980-11007081)
chr2 (262-359)||(30713189-30713287)
chr2 (271-359)||(9963801-9963890)
chr2 (260-327)||(2578110-2578178)
chr2 (375-558)||(9170146-9170325)
chr2 (260-369)||(28968851-28968961)
chr2 (260-368)||(11027939-11028048)
chr2 (260-368)||(34116173-34116282)
chr2 (298-359)||(40680279-40680340)
chr2 (260-307)||(2647035-2647083)
chr2 (260-299)||(1094488-1094527)
chr2 (260-328)||(14103298-14103367)
chr2 (260-368)||(45383138-45383247)
[»] chr7 (39 HSPs)
chr7 (260-368)||(44421901-44422010)
chr7 (260-357)||(10618957-10619055)
chr7 (260-369)||(33124731-33124841)
chr7 (260-368)||(222226-222335)
chr7 (260-368)||(22075099-22075208)
chr7 (260-368)||(33935544-33935653)
chr7 (260-358)||(23227009-23227108)
chr7 (260-358)||(23236162-23236261)
chr7 (278-367)||(41449794-41449884)
chr7 (260-362)||(48634483-48634586)
chr7 (260-368)||(7447912-7448021)
chr7 (260-359)||(18250002-18250102)
chr7 (261-368)||(21760583-21760691)
chr7 (260-368)||(17025361-17025470)
chr7 (260-368)||(33898944-33899053)
chr7 (260-368)||(36472475-36472584)
chr7 (260-369)||(3942212-3942322)
chr7 (259-368)||(32356996-32357106)
chr7 (260-369)||(35543555-35543665)
chr7 (260-368)||(33171534-33171643)
chr7 (260-368)||(37334314-37334423)
chr7 (260-368)||(37401566-37401675)
chr7 (260-368)||(46573612-46573721)
chr7 (260-359)||(18740227-18740327)
chr7 (266-368)||(11595796-11595899)
chr7 (260-362)||(26719851-26719954)
chr7 (280-365)||(24128503-24128589)
chr7 (260-368)||(49034224-49034333)
chr7 (260-361)||(17608748-17608847)
chr7 (260-362)||(33019337-33019440)
chr7 (266-359)||(45055770-45055864)
chr7 (260-368)||(5776130-5776239)
chr7 (266-358)||(33140812-33140905)
chr7 (260-368)||(37106862-37106971)
chr7 (260-368)||(43052908-43053017)
chr7 (260-297)||(37250070-37250107)
chr7 (260-360)||(45176281-45176382)
chr7 (329-369)||(20401102-20401142)
chr7 (260-296)||(29037853-29037889)
[»] chr6 (19 HSPs)
chr6 (260-368)||(1501879-1501988)
chr6 (260-359)||(4441310-4441410)
chr6 (260-369)||(5640251-5640361)
chr6 (260-368)||(17441189-17441298)
chr6 (281-368)||(11460014-11460102)
chr6 (260-369)||(3081717-3081827)
chr6 (260-361)||(6999298-6999400)
chr6 (260-368)||(10961796-10961905)
chr6 (129-173)||(5997756-5997800)
chr6 (260-299)||(9950830-9950869)
chr6 (260-368)||(13312053-13312164)
chr6 (260-327)||(27984931-27984999)
chr6 (260-358)||(7437335-7437434)
chr6 (136-179)||(8694416-8694459)
chr6 (278-359)||(12428925-12429007)
chr6 (266-359)||(33110495-33110589)
chr6 (266-299)||(22295953-22295986)
chr6 (115-167)||(13842192-13842244)
chr6 (268-363)||(18099855-18099951)
[»] scaffold0224 (1 HSPs)
scaffold0224 (260-369)||(7307-7417)
[»] scaffold0171 (1 HSPs)
scaffold0171 (260-368)||(21119-21227)
[»] scaffold0025 (1 HSPs)
scaffold0025 (279-362)||(11440-11524)
[»] scaffold0204 (1 HSPs)
scaffold0204 (260-370)||(26619-26730)
[»] scaffold0223 (1 HSPs)
scaffold0223 (280-368)||(14477-14566)
[»] scaffold0135 (1 HSPs)
scaffold0135 (268-371)||(32782-32884)
[»] scaffold0022 (1 HSPs)
scaffold0022 (264-359)||(124490-124586)
[»] scaffold0260 (1 HSPs)
scaffold0260 (260-316)||(10020-10077)


Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 12224943 - 12224308
Alignment:
Q  18 attttaatggtgaaaaatatgatactattttaatgaattattttttaatatcatcgtgcacnnnnnnnttatttttaataccataaaacaatttttt--c 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||  |    
T  12224943 attttaatggtgaaaaatatgatactattttaatgaattattttttaatatcatcgtgcacaaaaaaattatttttaataccataaaataattttttttc 12224844  T
Q  116 cattatcacacttcaacattggtcatgtaagaactagttgttgtaggttcgatcctcgacatcccaaatnnnnnnnnntcc------------ataaaat 203  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         | |            |||||||    
T  12224843 cattatcacatctcaacattggtcatgtaagaactagttgttgtaggttcgatcctcgacatcccgaataaaaaaaaattccataaaaatttaataaaat 12224744  T
Q  204 aaactaccatattaagaaacacaattattttttattnnnnnnnnnga---aacacaaatattttcagctcaagttcggctcatttggttcatgaaccaa- 299  Q
    ||||||||||||||||||||||||||||||||||||          |   |||||||||||||||||||||||||||||||||||||||||||||||||     
T  12224743 aaactaccatattaagaaacacaattattttttattaaaaaaaaaaagtaaacacaaatattttcagctcaagttcggctcatttggttcatgaaccaag 12224644  T
Q  300 ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctaccttcaactaaactcgacatgagagttttga 399  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12224643 ttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcattgtcagccctaccttcaactaaactcgacatgagagttttga 12224544  T
Q  400 aaattgttttgaatgatttgcttacatgcatatataatactaactaaactcaaagacatcatcaatatatgtcctaaaagaataacaaccttcttagaat 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12224543 aaattgttttgaatgatctgcttacatgcatatataatactaactaaactcaaagacatcatcaatatatgtcctaaaagaataacaaccttcttagaat 12224444  T
Q  500 ctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaacttgttgcatcgacgtcacaaaatggggagaaccaagt 599  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12224443 ctaacagaaaatctacattattgaactgaaggtttggcacccaatcaagtgtcgtatataaacttgttgcatcgacgtcacaaaatggggagaaccaagt 12224344  T
Q  600 agtttatgcaatcataaattttccttcttcatctct 635  Q
    ||||||||||||||||||||||||||||||||||||    
T  12224343 agtttatgcaatcataaattttccttcttcatctct 12224308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 12222278 - 12222126
Alignment:
Q  18 attttaatggtgaaaaatatgatactattttaatgaattattttttaatatcatcgtgcacnnnnnnnttatttttaataccataaaacaattttttcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||       ||||||||||||  ||||||||| |||  |||    
T  12222278 attttaatggtgaaaaatatgatactattttaatgaattattttttaatatcaccttgtacaaaaaagttatttttaata-tataaaacaaatttcgcca 12222180  T
Q  118 ttatcacacttcaacattggtcatgtaagaactagttgttgtaggttcgatcctc 172  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||    
T  12222179 ttatcacacgtcaacattggtcatataagaattagttgttgtagg-tcgatcctc 12222126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 31869625 - 31869727
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  31869625 attttcagcttaagttcggctcatttggttcatgaaccaagttcaacgatttaattgtcgaatcaagttccgaactattgtcgaattagttcggttcatt 31869724  T
Q  359 gtc 361  Q
    |||    
T  31869725 gtc 31869727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 44596548 - 44596658
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  44596548 attttcagttcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtcgagttggttcggttcatt 44596647  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  44596648 gccagccctac 44596658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 23915706 - 23915606
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| ||||||| |||||||| ||||||    
T  23915706 attttcagctaaagttcagctcatttggttcatgaaccaagttcaacgagataattgttgaatcgagtttcgaacttttgtcgagttggttcgattcatt 23915607  T
Q  359 g 359  Q
    |    
T  23915606 g 23915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 15306524 - 15306634
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||| || |||||| | ||||||||||||||||||||||| | |||||||||||||||    
T  15306524 attttccgctcaagttcagctcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttcatt 15306623  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  15306624 gccagccctac 15306634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 35810749 - 35810859
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||| || |||||| |  |||| |||||||||||||||    
T  35810749 attttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcatt 35810848  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  35810849 gccagccctac 35810859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 45581117 - 45581007
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| ||||||||||  ||||||||||||||||||||| ||||||||| ||||| | |||||||||| ||||||||| || | |||||||||||||||    
T  45581117 attttccgctcaagttcaactcatttggttcatgaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcaagttggttcggttcatt 45581018  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  45581017 gtcagccctac 45581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 20904036 - 20903959
Alignment:
Q  282 atttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||    
T  20904036 atttggttcatgaaccaagttcaacgagttaattgttgaattgagttccaaactattgtcgagttgattcggttcatt 20903959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 21680765 - 21680656
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||||||||||||  ||||| |||||| ||||||||| ||||| | |||||||||| ||||||||| ||||  ||||||||||||||    
T  21680765 atttttagctcaagttcggctcatttcattcataaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcgagctggttcggttcatt 21680666  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  21680665 gccaacccta 21680656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 28006381 - 28006481
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||| |  ||||||||| |||| |||||||||||||||    
T  28006381 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcatt 28006480  T
Q  359 g 359  Q
    |    
T  28006481 g 28006481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 3577722 - 3577805
Alignment:
Q  280 tcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    ||||||| |||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||| || ||||||||||||||||    
T  3577722 tcatttgattcatgaaccaagttcaacgagttaactgtcgaatcgagttccaaactattgtcgagttagttcggttcattgtca 3577805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 45653534 - 45653440
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgt 360  Q
    |||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||  |||||||| |||| |||| ||||||||||||    
T  45653534 agctcaagttcggctcatttggttcatgaaccaagttcaacgaaataattgtcgaatcgagttttgaactattttcgagttgg-tcggttcattgt 45653440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 51432228 - 51432149
Alignment:
Q  279 ctcatttggttcatgaaccaatt-caacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcat 357  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  51432228 ctcatttggttcatgaaccaggtacaacgagttaattgttgaatcgagctccgaattattgtcgagttggttcggttcat 51432149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 42916223 - 42916113
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| | |||| | ||||||| || |||||  |  ||||||||||||||||||||    
T  42916223 attttcagctcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcatt 42916124  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  42916123 gccacccctac 42916113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 14578694 - 14578585
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| | | ||||||  |||||| || |||||| |  |||| |||||||||||||||    
T  14578694 attttcagctccagttcggctcatttggttcatgaaccaagttcaacaaatcaattgtctaatcgaattacgaactctaatcgagttggttcggttcatt 14578595  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  14578594 gtcagcccta 14578585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 24575940 - 24576049
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| ||||||||||  |||||||||||||||||||| |||||||||| |||| | ||||| | |  ||||||||| |||| |||||||||||||||    
T  24575940 attttcaactcaagttcgtttcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaaatctcgaactattttcgagttggttcggttcatt 24576039  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  24576040 gtcagcccta 24576049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 25124994 - 25124885
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |  |||||| || |||||| |  |||| |||||||||||||||    
T  25124994 attttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggttcggttcatt 25124895  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  25124894 gccagcccta 25124885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 50447372 - 50447481
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| || |||||||||||||||||||||||| |||||| || ||||| |||||| | |||||||||  ||||||||| |||| |||||| ||||||||    
T  50447372 attttaagttcaagttcggctcatttggttcataaaccaagtttaacgaattaattatcgaatcgagtctcgaactattttcgagttggtttggttcatt 50447471  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  50447472 gtcagcccta 50447481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 42937105 - 42937215
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||| | |||||||||||||| || |||||| |  |||| ||||||| |||||||    
T  42937105 attttaagctcaagttcggctcatttgattcatgaaccaagttcgacgaatcaattgttgaatcgaattacgaactctaatcgagttggttcagttcatt 42937204  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  42937205 gccagccctac 42937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 14101895 - 14101996
Alignment:
Q  261 ttttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||||| ||| ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||  |||||||| || | ||||||||| ||||||    
T  14101895 ttttcagctcaaattcagctcatttggttcatgaactaagttcaatgagataattgtcgaatcgagtttggaactattatcaagttggttcggatcattg 14101994  T
Q  360 tc 361  Q
    ||    
T  14101995 tc 14101996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 15014346 - 15014455
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||| |||| | |||| | ||||||| || |||||| |  |||| |||||||||||||||    
T  15014346 attttcaactcaagttcggctcatttggttcatgaatcaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttcatt 15014445  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  15014446 gccaacccta 15014455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 29677628 - 29677511
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||| |||||||| ||||||||   |||| |  ||||||||  ||||||||| |||| |||||||||||||||    
T  29677628 attttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggttcatt 29677529  T
Q  359 gtcaaccctaccttcaac 376  Q
    | || |||||| ||||||    
T  29677528 gccagccctactttcaac 29677511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 46265053 - 46264944
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| |||| | |||| | ||||||| || |||||  |  ||||||||||||||||||||    
T  46265053 attttcagctcaagttcggctcatttagttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcatt 46264954  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  46264953 gccaccccta 46264944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 47983294 - 47983395
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| |||||||||||| |||||||| |||||| | | |||| | ||||||| |  ||||||||| |||| |||||||||||||||||||||||    
T  47983294 ctcaagttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgtcaaccc 47983393  T
Q  367 ta 368  Q
    ||    
T  47983394 ta 47983395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 7016183 - 7016075
Alignment:
Q  261 ttttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||| | | |||||| |||||||||  |||| | |  |||| ||||||||||||||||    
T  7016183 ttttgagctcaagttcagctcatttggttcatgaaccaagttcaacaaatcaattgtcgaatcgagtctcgaattttgttcgagttggttcggttcattg 7016084  T
Q  360 tcaacccta 368  Q
    ||| |||||    
T  7016083 tcagcccta 7016075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 563
Target Start/End: Original strand, 23316277 - 23316356
Alignment:
Q  484 acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact 563  Q
    |||||||||||||| || ||||||||||||||||||| ||||| ||| ||| ||||||||||||||  ||| ||||||||    
T  23316277 acaaccttcttagagtcgaacacaaaatctacattatggaactaaagatttaccacccaatcaagttccgtttataaact 23316356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 30251455 - 30251566
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaat-tcaacgagttaattgttgaatcgagttccgaactat-tgtcgaattggttcggttcat 357  Q
    ||||| |||||||||||   |||||| |||||||||||||  |||||||||||||| | ||||| ||||  ||||||| | ||||||||||| |||||||    
T  30251455 atttttagctcaagttcaattcatttagttcatgaaccaaactcaacgagttaattatcgaatcaagttttgaactatgtttcgaattggtttggttcat 30251554  T
Q  358 tgtcaaccctac 369  Q
    ||||||||||||    
T  30251555 tgtcaaccctac 30251566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 7841665 - 7841762
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    |||||||| |||||||||||||||||||| |||||||| |||||| | |||||||||  |||| |||| |||| |||||||||||||||| || |||||    
T  7841665 aagttcggttcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaa-tattttcgagttggttcggttcattgacagcccta 7841762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 39802876 - 39802766
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacca-attcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||||| |||| ||  ||| |||||  ||||||||| |||| |||||||| ||||||    
T  39802876 attttcaactcaagttcgactcatttggttcatgaaccatgttcaacgaattaactgccgaaccgagtctcgaactattttcgagttggttcgattcatt 39802777  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  39802776 gccagccctac 39802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 51432312 - 51432239
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaatt-caacgagttaattgttgaatcgagttccgaa 332  Q
    |||||||||| || |||  ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  51432312 attttcagcttaatttcaactcatttggttcatgaaccaagtacaacgagttaattgttgaatcgagctccgaa 51432239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 7596424 - 7596524
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| |||| | |||| | ||||| | || |||||| |  |||| |||||||||||||||    
T  7596424 attttcagctcaagttcggctcatttggttcataaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttggttcggttcatt 7596523  T
Q  359 g 359  Q
    |    
T  7596524 g 7596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 31816618 - 31816702
Alignment:
Q  279 ctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    ||||||||||||||||||||| |||||||| | ||||   |||| ||||| ||||||||| |||| |||||||||||||||||||    
T  31816618 ctcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggttcggttcattgtca 31816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 5204578 - 5204479
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||| ||||||| |||||||||| |||| | ||||||| |  | ||||||| |||| |||||||| ||||||    
T  5204578 attttcaactcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcgattcatt 5204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 15257280 - 15257169
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| | ||| ||   |||| | |||||||||  | ||||||| | || |||||||||||||||    
T  15257280 attttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggttcggttcatt 15257181  T
Q  359 gtcaaccctacc 370  Q
    |||| |||||||    
T  15257180 gtcagccctacc 15257169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 15662980 - 15663083
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||| |||||| || || | |||| |  | || |||||||||||||||    
T  15662980 attttcagctcaagttcggctcatttggtacatgaaccaagttcgacgaatcaattattgaattgaattacaaactctaattgagttggttcggttcatt 15663079  T
Q  359 gtca 362  Q
    ||||    
T  15663080 gtca 15663083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 7996013 - 7996111
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    ||||||| |||||| |||| ||||||||| |||||||| | |||| | ||||||| |  ||||||||| || | |||||||||||||||||||||||||    
T  7996013 aagttcgactcattaggtttatgaaccaagttcaacgaatcaattatcgaatcgaatctcgaactattttcaagttggttcggttcattgtcaacccta 7996111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 369
Target Start/End: Original strand, 36119110 - 36119212
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    ||||||||| | ||||||||||||| |||||| ||| |||||  |||||| ||||||| || ||||||||| |  | ||||||||||||||||||| |||    
T  36119110 ctcaagttcagttcatttggttcataaaccaagttcgacgagaaaattgtcgaatcgaatttcgaactattttttagttggttcggttcattgtcagccc 36119209  T
Q  367 tac 369  Q
    |||    
T  36119210 tac 36119212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 19508565 - 19508661
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtc 361  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||||   || |||||||||||||| |  |||| |||  |||||||||||||    
T  19508565 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgtc 19508661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 11991325 - 11991380
Alignment:
Q  282 atttggttcatgaacca-attcaacgagttaattgttgaatcgagttccgaactat 336  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||    
T  11991325 atttggttcatgaaccatattcaaagagttaattgttgagtcgagttccaaactat 11991380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 44905311 - 44905256
Alignment:
Q  376 ctaaactcgacatgagagttttgaaaattgttttgaatgatttgcttacatgcata 431  Q
    ||||||||||||||||||||||||||| |||||||||  |  ||||||||||||||    
T  44905311 ctaaactcgacatgagagttttgaaaactgttttgaaacaactgcttacatgcata 44905256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 47602971 - 47602861
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | |||| || |||||||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  47602971 attttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 47602872  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  47602871 gtcagccctac 47602861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 14725362 - 14725419
Alignment:
Q  280 tcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactat 336  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||| ||||| |||||||    
T  14725362 tcatttgattcatgaaccaagttcaacgagataattgttgaatcaagttcggaactat 14725419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 23916841 - 23916950
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||  | || | |||| | ||||||| || |||||| |  |||| |||||| ||||||||    
T  23916841 attttcagctcaagttaggctcatttggttaatgaaccaagtttgatgaatcaattatcgaatcgaattacgaactttaatcgagttggtttggttcatt 23916940  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  23916941 gtcagcccta 23916950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 368
Target Start/End: Original strand, 6413272 - 6413379
Alignment:
Q  262 tttcagctcaagttcggctcatttggttcatgaacca-attcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgt 360  Q
    ||||| ||||||||||  |||||||||||||||||||  |||||||| | |||| |  |||||| |  ||||||||| |||| |||||||| |||||||     
T  6413272 tttcaactcaagttcgattcatttggttcatgaaccaggttcaacgaatcaattatcaaatcgaatctcgaactattttcgagttggttcgattcattgc 6413371  T
Q  361 caacccta 368  Q
    || |||||    
T  6413372 cagcccta 6413379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 27076618 - 27076515
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaac 364  Q
    |||||||||||||||||||| ||||||| ||||| |||||||| |||||| | ||||| |||    ||||||| || | |||||||  |||||||||| |    
T  27076618 agctcaagttcggctcatttagttcatggaccaagttcaacgaattaattatcgaatcaagtcttaaactattttcaagttggttcaattcattgtcagc 27076519  T
Q  365 ccta 368  Q
    ||||    
T  27076518 ccta 27076515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 24469926 - 24469816
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | |||| || |||||||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  24469926 attttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 24469827  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  24469826 gccagccctac 24469816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 20347697 - 20347754
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaa-ccaattcaacgagttaattgt 316  Q
    ||||||| || |||||||||||||||||| |||||| | |||||||||| ||||||||    
T  20347697 attttcatcttaagttcggctcatttggtacatgaatcaaattcaacgaattaattgt 20347754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 32179889 - 32179998
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | ||||||| |||| ||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  32179889 attttcagctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 32179988  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  32179989 gccagcccta 32179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 7702866 - 7702978
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | |||| || | |||||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  7702866 attttcagctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 7702965  T
Q  359 gtcaaccctacct 371  Q
    | || ||||||||    
T  7702966 gccagccctacct 7702978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 376 - 563
Target Start/End: Original strand, 38246124 - 38246311
Alignment:
Q  376 ctaaactcgacatgagagttttgaaaattgttttgaatgatttgcttacatgcatatataatactaactaaactcaaagacatcatcaatatatgtccta 475  Q
    ||||||| ||||||||| ||| |||||||||||||||  | |||||||||  |||||||||||| |||  ||||||  ||||||||  ||| |||| |||    
T  38246124 ctaaacttgacatgagaatttagaaaattgttttgaaacaattgcttacagacatatataatac-aaccgaactcagtgacatcatttatacatgttcta 38246222  T
Q  476 aaagaat-aacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact 563  Q
    || |||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  38246223 aaggaatcaacaaccttcttagaatctaacacaaagtctacattatcaaactgaaggtttgccacccaatcaagtgtcgtacataaact 38246311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 11055335 - 11055226
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  11055335 attttccgctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttcatt 11055236  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  11055235 gtcagcccta 11055226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 22184534 - 22184643
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  22184534 attttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcatt 22184633  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  22184634 gccagcccta 22184643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 27891418 - 27891520
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||    
T  27891418 attttcagctcaagttcagctcatttg-ttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttgattcgattcatt 27891516  T
Q  359 gtca 362  Q
    ||||    
T  27891517 gtca 27891520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 52813632 - 52813741
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||  ||| |||| || |||||||||||| |||||||||||||||    
T  52813632 attttcagcttaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcaaatagagtcccaaactattgtcgagttggttcggttcatt 52813731  T
Q  359 gtcaacccta 368  Q
    ||||||||||    
T  52813732 gtcaacccta 52813741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 26632967 - 26633067
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||||    
T  26632967 attttcagctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagttacgaactattatcgagttggttcggttcatt 26633066  T
Q  359 g 359  Q
    |    
T  26633067 g 26633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 38791728 - 38791832
Alignment:
Q  265 cagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaa 363  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||| |||||||||||||||| ||     
T  38791728 cagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattga-ttccaaactattgtcgagttggttcggttcattgccag 38791826  T
Q  364 ccctac 369  Q
    ||||||    
T  38791827 ccctac 38791832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 51995109 - 51995209
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||  ||||||||| |||| |||||||||||||||    
T  51995109 attttgagctcaagttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggttcggttcatt 51995208  T
Q  359 g 359  Q
    |    
T  51995209 g 51995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 36156403 - 36156298
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||| ||||||| || |||||| |  |||| |||||||||||||||    
T  36156403 attttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcatt 36156304  T
Q  359 gtcaac 364  Q
    ||||||    
T  36156303 gtcaac 36156298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 56224176 - 56224285
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||| || |||| ||||||||  | || |||||||||||||||    
T  56224176 attttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaattgttgagtcaagtttcgaactatgtttgagttggttcggttcatt 56224275  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  56224276 gtcagcccta 56224285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 9959381 - 9959473
Alignment:
Q  278 gctcatttggttcatgaaccaattcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctacc 370  Q
    ||||||||| ||||||||| | |||||||||||| || | |||||||||| |||||||||||||| ||||||||||||||||||| |||||||    
T  9959381 gctcatttgattcatgaacaagttcaacgagttatttatagaatcgagtttcgaactattgtcgagttggttcggttcattgtcagccctacc 9959473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 12673137 - 12673027
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||| |  ||||||||| |||| |||||||||||||||    
T  12673137 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcatt 12673038  T
Q  359 gtcaaccctac 369  Q
    | |||| ||||    
T  12673037 gccaactctac 12673027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 13761830 - 13761940
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |  ||||||||  || || ||||    
T  13761830 attttcagctcaaattcagctcatttggttcatgaaccaagtccaacgagttaattgtcgaatcgagttccgaactttgttcgaattgtctcagtccatt 13761929  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  13761930 gtcagccctac 13761940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 4274666 - 4274565
Alignment:
Q  259 tattttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcat 357  Q
    |||||| ||||||||||||||||||||| |||||||| ||  ||||||||| ||||||| ||||| |||| ||||||||| |||| ||||||||||||||    
T  4274666 tatttttagctcaagttcggctcatttgtttcatgaatcaggttcaacgagataattgtcgaatcaagtttcgaactattttcgagttggttcggttcat 4274567  T
Q  358 tg 359  Q
    ||    
T  4274566 tg 4274565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 19455267 - 19455159
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| ||||||||| ||||||||| |||||||||||| |||||||| ||||||||  ||||||||| ||||||||| ||||||  | ||||||||||    
T  19455267 attttcaactcaagttcagctcatttgattcatgaaccaagttcaacgaattaattgtcaaatcgagtttcgaactattttcgaataagctcggttcatt 19455168  T
Q  359 gtcaaccct 367  Q
    |||| ||||    
T  19455167 gtcagccct 19455159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 351
Target Start/End: Complemental strand, 48151235 - 48151143
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcg 351  Q
    ||||||||||||||||| ||||||||||||  |||||||| |||||| || ||||||| |||||||||| |||||||||||||| ||||||||    
T  48151235 attttcagctcaagttcagctcatttggtttgtgaaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcg 48151143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 50147027 - 50146927
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||| | |||||| ||||||| || |||||| |  ||||||||||||||||||||    
T  50147027 attttcagctcaagtccggttcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttcatt 50146928  T
Q  359 g 359  Q
    |    
T  50146927 g 50146927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 375 - 536
Target Start/End: Complemental strand, 46210843 - 46210682
Alignment:
Q  375 actaaactcgacatgagagttttgaaaattgttttgaatgatttgcttacatgcatatataatactaactaaactcaaagacatcatcaatatatgtcct 474  Q
    |||||||| || | |||||||||||| | | |||| ||  || || ||||||||||| || ||| |||| |||||||| |  |||||| |||||||||||    
T  46210843 actaaacttgataagagagttttgaagactattttaaaacatatgtttacatgcatacattata-taaccaaactcaatgttatcatctatatatgtcct 46210745  T
Q  475 aaaagaata-acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgc 536  Q
    |||| |||  |||||||||||||||||||| |||||||| ||||||| ||| |||||||||||    
T  46210744 aaaataatcgacaaccttcttagaatctaaaacaaaatcaacattatcgaaatgaaggtttgc 46210682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 43387311 - 43387398
Alignment:
Q  283 tttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctac 369  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||| |  |||||||||||| |||||||||||||||| || ||||||    
T  43387311 tttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcctaaactattgtcgagttggttcggttcattgccagccctac 43387398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 46944651 - 46944544
Alignment:
Q  262 tttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgt 360  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||||||  |||| | ||||||| |  ||||||||| | || |||||||||||||||||    
T  46944651 tttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggttcggttcattgt 46944552  T
Q  361 caacccta 368  Q
    || |||||    
T  46944551 cagcccta 46944544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 269 - 368
Target Start/End: Complemental strand, 49405735 - 49405635
Alignment:
Q  269 tcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccct 367  Q
    ||||||||| |||||||||||||| |||||| |||||||| | ||||   |||||||||| ||||||||| |||  ||||||||||||||||||| ||||    
T  49405735 tcaagttcgactcatttggttcataaaccaagttcaacgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttcattgtcagccct 49405636  T
Q  368 a 368  Q
    |    
T  49405635 a 49405635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 9469808 - 9469917
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||      |||||| || |||| || ||||||||  |||| |||||||||||||||    
T  9469808 attttcagctcaagtttggctcatttggttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcatt 9469907  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  9469908 gtcagcccta 9469917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 51408045 - 51407948
Alignment:
Q  273 gttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctac 369  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||   |||||||||  ||||||||| |||| ||||||| ||||||||||| ||||||    
T  51408045 gttcgactcatttggttcatgaaccaagttgaacgaattaattaccgaatcgagtctcgaactattttcgagttggttcagttcattgtcagccctac 51407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 9874306 - 9874214
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||  |||||||| |   |||||||| | || |||||||||||||||||||    
T  9874306 aagttcggctcatttggttcatgtaccaatttcaacgaattaattactgaatcgaatcttgaactatttttgagttggttcggttcattgtca 9874214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 367
Target Start/End: Original strand, 34718170 - 34718278
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| ||||||| ||||||| |||||| |||||| ||||||||||| | |||  ||||||||| | |||||||||||| ||  |||||||||||    
T  34718170 attttcagctgaagttcgactcatttagttcataaaccaaattcaacgagttgactgtcaaatcgagtttcaaactattgtcgagttatttcggttcatt 34718269  T
Q  359 gtcaaccct 367  Q
      |||||||    
T  34718270 accaaccct 34718278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 6866212 - 6866173
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6866212 attttcagctcaagttcggctcatttggttcatgaaccaa 6866173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 48339208 - 48339097
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||| | | | |||| ||||||| || |||||| |  | || |||||||| ||||||    
T  48339208 attttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcatt 48339109  T
Q  359 gtcaaccctacc 370  Q
    |||| |||||||    
T  48339108 gtcagccctacc 48339097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 80528 - 80637
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||   ||||   ||||| | || ||||||||| |||| |||| ||||||||||    
T  80528 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggttcatt 80627  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  80628 gccagcccta 80637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 9222231 - 9222129
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| ||||||||||   |||||||| ||||||||   |||||| |||||||||  ||||||||| |||| |||||||||||||||| |||| |    
T  9222231 ctcaagttcgactcatttggtg--tgaaccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggttcggttcattgccaacgc 9222134  T
Q  367 tacct 371  Q
    |||||    
T  9222133 tacct 9222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 36543812 - 36543921
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||| |    |||||| || |||| || ||||||||  |||| ||||||| |||||||    
T  36543812 attttcagctcaagtttggcttatttggttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttcatt 36543911  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  36543912 gtcagcccta 36543921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 15697192 - 15697080
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||| ||| |||||||||||||| ||| |||||||| | |||||| || ||||||  |||||| |  |||| |||  ||||||||||    
T  15697192 atttttagctcaagttcagcttatttggttcatgaatcaagttcaacgaatcaattgtcgagtcgagtctcgaactttattcgagttgtctcggttcatt 15697093  T
Q  359 gtcaaccctacct 371  Q
    |||| ||||||||    
T  15697092 gtcagccctacct 15697080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 16742426 - 16742346
Alignment:
Q  279 ctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||||| |||||||| | |||||  ||||||||||| |||||||| ||||||  ||| ||||||||    
T  16742426 ctcatttggttcatgaaccaagttcaacgaatcaattgccgaatcgagttctgaactattatcgaatgagtttggttcatt 16742346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 40797861 - 40797961
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||| ||   |||| | ||||| |||  ||||||||| | || |||||||||||||||    
T  40797861 attttcaactcaagttcgactcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagtatcgaactatttttgagttggttcggttcatt 40797960  T
Q  359 g 359  Q
    |    
T  40797961 g 40797961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 368
Target Start/End: Complemental strand, 55892081 - 55891985
Alignment:
Q  273 gttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    ||||| ||| ||||||||||||||||| |||||||| ||||||   |||||||||  ||||||||| | || ||||||| ||||||||||| |||||    
T  55892081 gttcgactcgtttggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactatttttgagttggttcagttcattgtcagcccta 55891985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 28265759 - 28265672
Alignment:
Q  283 tttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctac 369  Q
    ||||||||||||||||| |||||||| ||||||   |||||||||  ||||||||| |||| ||||||| |||||||| || ||||||    
T  28265759 tttggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactattttcgagttggttcagttcattgccagccctac 28265672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 32397807 - 32397698
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| || |||||||||||| ||||| |||||||||||| |||  ||| | |||||| || |||| || |||||| |  |||||||||||||||| |||    
T  32397807 atttttagttcaagttcggcttatttgattcatgaaccaagttcggcgaatcaattgtcgagtcgaattacgaactttaatcgaattggttcggtttatt 32397708  T
Q  359 gtcaacccta 368  Q
    ||||| ||||    
T  32397707 gtcaatccta 32397698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 48802524 - 48802475
Alignment:
Q  319 aatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||| |||||    
T  48802524 aatcgagtttcgaactattttcgagttggttcggttcattgtcagcccta 48802475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 7505560 - 7505608
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacga 307  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  7505560 atttttagctcaagttcggctcatttggttcatgaatcaagttcaacga 7505608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 43812166 - 43812098
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagtt 327  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||| |||| | |||||| ||||||||||    
T  43812166 attttcagtttaagttcggcccatttggttcatgaaccaagttcgacgaatcaattgtcgaatcgagtt 43812098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 25134605 - 25134644
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  25134605 attttcaactcaagttcgactcatttggttcatgaaccaa 25134644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 48731282 - 48731172
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||| | | |||||||||||||||||| ||||| |    |||||| || |||| || ||||||||  |||| |||||||||||||||    
T  48731282 atttttagctcaagttcagtttatttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttcatt 48731183  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  48731182 ggcagccctac 48731172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 13455732 - 13455841
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| |||||||||| | |||||||||||||| || ||| |||||||| |||||| | ||||||| |  | || |||| || | ||||||||||| |||    
T  13455732 attttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaatcgaatctcaaattattttcaagttggttcggtttatt 13455831  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  13455832 gtcagcccta 13455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 52706254 - 52706287
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa 299  Q
    |||||||||||||||| |||||||||||||||||    
T  52706254 agctcaagttcggctcgtttggttcatgaaccaa 52706287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 25102703 - 25102667
Alignment:
Q  263 ttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  25102703 ttcaactcaatttcggctcatttggttcatgaaccaa 25102667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 28470869 - 28470952
Alignment:
Q  279 ctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    ||||||||||||||||||||| |||||||| ||||||   |||||||||| || ||| || |||| ||||||  |||||||||||    
T  28470869 ctcatttggttcatgaaccaagttcaacgaattaattaccgaatcgagtt-cgtacttttttcgagttggtttagttcattgtca 28470952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 9505230 - 9505120
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  9505230 attttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcatt 9505131  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  9505130 gccagccctac 9505120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 52199460 - 52199569
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||| || |||||||||||| |||||||| ||||||    
T  52199460 attttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggttcgattcatt 52199559  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  52199560 gtcagcccta 52199569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 28242614 - 28242714
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||| ||| |||||||||||    
T  28242614 attttcagctcaaattcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcaagttccgaattattgtcgagttgattcggttcatt 28242713  T
Q  359 g 359  Q
    |    
T  28242714 g 28242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 52934843 - 52934943
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| | ||||||| |||||||    
T  52934843 attttctgctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcaagttggttcagttcatt 52934942  T
Q  359 g 359  Q
    |    
T  52934943 g 52934943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 1674660 - 1674759
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| ||||||  ||||||||||||||||||||| |||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  1674660 attttcagcttaagttcaactcatttggttcatgaaccaagttcaacaagataattgttgaatcgaattctgaactattgtcgagttggttcggttcatt 1674759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 33438840 - 33438729
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||| ||||||| || | |||| |  |||| |||||||||||||||    
T  33438840 attttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttcatt 33438741  T
Q  359 gtcaaccctacc 370  Q
    |||| |||||||    
T  33438740 gtcagccctacc 33438729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 25253733 - 25253843
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||| |||| ||||| || ||||||||| ||||||  |||| |||||||||||||||    
T  25253733 atttttagctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcatt 25253832  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  25253833 gccagccctac 25253843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 12710733 - 12710842
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||| |  ||||||||| |||| |||||||||||||||    
T  12710733 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcatt 12710832  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  12710833 gccagcccta 12710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 54393552 - 54393443
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||| ||||||| || |||||| |  |||| |||||||||||||||    
T  54393552 attttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcatt 54393453  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  54393452 gccagcccta 54393443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 30662240 - 30662131
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||| |||||||||||| |||||||||| |||| | ||||||| |  | ||||||| |||| ||||||||| |||||    
T  30662240 attttcaactcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcggctcatt 30662141  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  30662140 gtcagcccta 30662131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 369
Target Start/End: Complemental strand, 19560875 - 19560773
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    ||||||||| |||  ||| ||||||||||||| |||||||| |||||||| || |||| |||||||||||  |||| |||||||||||||||| || |||    
T  19560875 ctcaagttcagcttgtttcgttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaactatattcgagttggttcggttcattgccagccc 19560776  T
Q  367 tac 369  Q
    |||    
T  19560775 tac 19560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 38643647 - 38643546
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    ||||||||| |||| ||||||||||||||||| |||||| | |||||||| ||||  ||| || |||||||||||| || |||||||| |||| ||||||    
T  38643647 ctcaagttcagctcttttggttcatgaaccaaattcaacaaattaattgtcgaattaagtcccaaactattgtcgagttagttcggtttattgccaaccc 38643548  T
Q  367 ta 368  Q
    ||    
T  38643547 ta 38643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 39135385 - 39135494
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||| || |||| ||  |||||||  |||| ||||||||||| |||    
T  39135385 attttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggtttatt 39135484  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  39135485 gccagcccta 39135494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 55203165 - 55203066
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactat--tgtcgaattggttcggttcattgtcaaccct 367  Q
    |||||| ||||||||| |||| ||| ||| |||||||| |||||||| ||||||||||| ||| |||  ||||||||| |||||||||||||||| ||||    
T  55203165 aagttcagctcatttgtttcaagaatcaaattcaacgaattaattgtcgaatcgagttctgaattatattgtcgaattagttcggttcattgtcagccct 55203066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 30743611 - 30743702
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||| ||  | || ||||| ||||||||||  |||| |||||||||||||||    
T  30743611 ctcaaattcagctcatttggttcatgaaccaagttcaacgagttcatcttcgagtcgagctccgaactatattcgagttggttcggttcatt 30743702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 46293322 - 46293283
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46293322 attttcagctcaagttcggctcatttggttcatgaaccaa 46293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 39469640 - 39469530
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |    |||| | ||||||| || ||||||||  |||| ||||||| |||||||    
T  39469640 attttcagctcaagttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttggttcagttcatt 39469541  T
Q  359 gtcaaccctac 369  Q
     ||| ||||||    
T  39469540 atcagccctac 39469530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 39942909 - 39942800
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||||||   |||||||  ||||||| || ||||||||  |||| ||||||| |||||||    
T  39942909 attttcagctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcgaatttcgaactatactcgagttggttcagttcatt 39942810  T
Q  359 gtcaacccta 368  Q
    | ||| ||||    
T  39942809 gccaatccta 39942800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 20550311 - 20550211
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||| ||||| |||||||||||| |||||||| |||||| | | |||| | |||||||||  ||||||||| |||| |||||| ||||||||    
T  20550311 attttcaactcatgttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgagtatcgaactattttcgagttggtttggttcatt 20550212  T
Q  359 g 359  Q
    |    
T  20550211 g 20550211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 26049649 - 26049549
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||| |||||||||||| ||||||  || |||| | ||||||| |  | ||||||| |||| |||||||||||||||    
T  26049649 attttcaactcaagttcgactcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggttcggttcatt 26049550  T
Q  359 g 359  Q
    |    
T  26049549 g 26049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 20763160 - 20763214
Alignment:
Q  128 tcaacattggtcatgtaagaactagttgttgtaggttcgatcctcgacatcccaa 182  Q
    |||||| |||||||| ||||||||||||| | | |||||||||||||||||||||    
T  20763160 tcaacactggtcatgcaagaactagttgtcgcatgttcgatcctcgacatcccaa 20763214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 40943592 - 40943701
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| | ||| ||   |||| |  ||||||||  ||||||||| |||| ||||||||||| |||    
T  40943592 attttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggtttatt 40943691  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  40943692 gccagcccta 40943701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 20764234 - 20764181
Alignment:
Q  129 caacattggtcatgtaagaactagttgttgtaggttcgatcctcgacatcccaa 182  Q
    ||||| || ||||||| ||||||||||||| |||| ||||||||| ||||||||    
T  20764234 caacactgttcatgtacgaactagttgttgcaggtacgatcctcggcatcccaa 20764181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 45714730 - 45714827
Alignment:
Q  263 ttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    ||||||||||||||| |||||||| || ||||| ||| |||||||| | |||||| ||||||| |  |||||| |  |||| ||||||| ||||||||    
T  45714730 ttcagctcaagttcgactcatttgatttatgaatcaagttcaacgaatcaattgtcgaatcgaataacgaactttaatcgagttggttcagttcattg 45714827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 28687103 - 28687203
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||| ||  || | | ||||||||||||||| |||||| ||  |||| |||| ||||||||||||| ||  |||| |||||||| ||||||    
T  28687103 attttcagctcaaatttagcccgtctggttcatgaaccaagttcaacaagcaaattattgagtcgagttccgaaccatattcgatttggttcgcttcatt 28687202  T
Q  359 g 359  Q
    |    
T  28687203 g 28687203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 1840796 - 1840687
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||    
T  1840796 attttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgagttctgaactattgtcgagttggttcggttcatt 1840697  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  1840696 gccaacccta 1840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 19282223 - 19282120
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||| |||| ||||||| | |||||    
T  19282223 attttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaatgaagttccgaactattatcgagttggttcagctcatt 19282124  T
Q  359 gtca 362  Q
    ||||    
T  19282123 gtca 19282120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 27196108 - 27196219
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| || ||||| | |||| | |||||||||  ||||||||| |||| |||||||||||||||    
T  27196108 attttcaactcaagttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcatt 27196207  T
Q  359 gtcaaccctacc 370  Q
    |||| |||||||    
T  27196208 gtcagccctacc 27196219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 31021900 - 31021997
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaat-tcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||||||| | || ||||||||||||||||  |||| |||||||||||||||||||    
T  31021900 agctcaaattcagctcatttggttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttcattgtca 31021997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 3801473 - 3801362
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||| || |||| || ||||||||  |||| |||||||||||||||    
T  3801473 attttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcatt 3801374  T
Q  359 gtcaaccctacc 370  Q
    | || |||||||    
T  3801373 gccagccctacc 3801362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 32945122 - 32945021
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| ||||||||||||||||||||| || ||||| | ||||   |||||||||| ||||||||| |||| ||||||||||||||||||| |||    
T  32945122 ctcaagttcgactcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttcattgtcagccc 32945023  T
Q  367 ta 368  Q
    ||    
T  32945022 ta 32945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 39414224 - 39414312
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||||    
T  39414224 aagttcagctcattaggttcatggaccaagttcaacgagttaattgtcgaattaagtttcgaactattgtcgagttggttcggttcatt 39414312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 41783362 - 41783465
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaac 364  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |||||   || |||||||||||||| |  |||| |||  |||||||||||||| |    
T  41783362 agctcaagttcggctcatttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgtcagc 41783461  T
Q  365 ccta 368  Q
    ||||    
T  41783462 ccta 41783465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 2676047 - 2676156
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacc-aattcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| |||| | |||||| | ||||| || |||||| |  ||||||||||| ||||||||    
T  2676047 attttcagctcaagttcgactcatttggttcatgaacctagttcgacgaatcaattgtcggatcgaattacgaactttaatcgaattggtttggttcatt 2676146  T
Q  359 gtcaacccta 368  Q
      ||||||||    
T  2676147 accaacccta 2676156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 20189004 - 20189114
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| || ||||||||||||||||||||||||||||||| ||| |||| | |||| | ||||| | || |||||| |  |||| ||| |||||||||||    
T  20189004 atttttagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttgattcggttcatt 20189103  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  20189104 gtcagccctac 20189114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 14500809 - 14500740
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaact 334  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  ||||| | || ||||||||||||||    
T  14500809 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattatcgagtcgagttccgaact 14500740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 15933200 - 15933304
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaac 364  Q
    |||||| ||||  |||||| |||||||||||||| |||||||| |||| ||| || |||| || ||||||||  |||| |||||||||||||||| || |    
T  15933200 agctcatgttcaactcattaggttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattgccagc 15933299  T
Q  365 cctac 369  Q
    |||||    
T  15933300 cctac 15933304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 20190693 - 20190654
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  20190693 attttgagctcaagttcggctcatttggttcatgaaccaa 20190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 38522970 - 38522931
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  38522970 attttcagctcaagtttggctcatttggttcatgaaccaa 38522931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 40056450 - 40056363
Alignment:
Q  282 atttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||| || | ||||||| |||| ||||||   |||||| |||||||||    
T  40056450 atttggttcatgaaccaaattcaacgagataattgtcgaatcgaatttcaaactattatcgagttggtttaattcattatcaacccta 40056363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 10327981 - 10328070
Alignment:
Q  280 tcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    |||||||||||||||| ||| |||||||| | ||||   ||||||||||  |||| ||| |||| ||||||||||||||||||| |||||    
T  10327981 tcatttggttcatgaatcaagttcaacgaatcaattaccgaatcgagttttgaacaattttcgagttggttcggttcattgtcagcccta 10328070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 10494016 - 10494125
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||  |||||||| ||||||||   |||| ||||||||| |  | ||||||| | || |||||||||||||||    
T  10494016 attttcaactcaagttcgactcatttggtttgtgaaccaagttcaacgaaccaattattgaatcgaatatcaaactatttttgagttggttcggttcatt 10494115  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  10494116 gccagcccta 10494125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 26218084 - 26218153
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaact 334  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||||   || ||||||||||||||    
T  26218084 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaact 26218153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 27450682 - 27450581
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| |||||| |||||||||| ||| |||||||| | |||| | ||||||| |  || |||||| |||| |||||||||||||||| || |||    
T  27450682 ctcaagttcgactcattaggttcatgaatcaaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttcattgccagccc 27450583  T
Q  367 ta 368  Q
    ||    
T  27450582 ta 27450581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 13989010 - 13989075
Alignment:
Q  117 attatcacacttcaacattggtcatgtaagaactagttgttgtaggttcgatcctcgacatcccaaat 184  Q
    |||||||||  ||||| ||||||||| ||| ||  ||||||| |||||||||||||||||||||||||    
T  13989010 attatcacatctcaaccttggtcatggaagcac--gttgttgcaggttcgatcctcgacatcccaaat 13989075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 28247511 - 28247550
Alignment:
Q  329 cgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  28247511 cgaactattttcgaattggttcggttcattgtcagcccta 28247550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 31620902 - 31621009
Alignment:
Q  263 ttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtc 361  Q
    ||||||| ||||||  |||||| |||||||||||||| ||||| |   ||||||| || |||| || ||||||||  || | ||||||||||||||||||    
T  31620902 ttcagctgaagttcaactcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattgtc 31621001  T
Q  362 aaccctac 369  Q
    | ||||||    
T  31621002 agccctac 31621009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 5382926 - 5382825
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||| ||||| ||| ||||||||||||| ||| |||||||| ||||||   |||||||||  |||||| || || | ||||||| ||||||||||| |||    
T  5382926 ctcaggttcgactcgtttggttcatgaatcaagttcaacgaattaattaccgaatcgagtctcgaactcttttcaagttggttcagttcattgtcagccc 5382827  T
Q  367 ta 368  Q
    ||    
T  5382826 ta 5382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 34857386 - 34857487
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| |||||| | |||||||| ||| |||||||| | |||| |||||| || |  |  |||||| |||| |||||||||||||||| ||||||    
T  34857386 ctcaagttcgactcattagattcatgaatcaagttcaacgaatcaattattgaattgaatctcacactattttcgagttggttcggttcattgccaaccc 34857485  T
Q  367 ta 368  Q
    ||    
T  34857486 ta 34857487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 3307965 - 3308075
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  3307965 attttctgctcaagttcggctcatttggttcatgaactaagttctacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcatt 3308064  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  3308065 gccagccctac 3308075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 32740671 - 32740769
Alignment:
Q  261 ttttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||| | |||||||||||||||||||| ||||| ||||||||||| |||| ||||||| |||||||||||| |||||||||||||||    
T  32740671 ttttcagttcaagttcagttcatttggttcatgaaccaaattcaatgagttaattgtcgaattgagttccaaactattgtcgagttggttcggttcatt 32740769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 9412625 - 9412524
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| ||| ||||||  |||| |||||||||||||||| || |||    
T  9412625 ctcaagttcagctcatttggttcatgaaccaagttcaacgagttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattgccagccc 9412526  T
Q  367 ta 368  Q
    ||    
T  9412525 ta 9412524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 43384831 - 43384925
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||||  ||||||||||||||||||||| |||||||| |||||| | ||||||| |  ||||||||| |||| ||||||||||||||||    
T  43384831 agctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 43384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 23181186 - 23181254
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacc-aattcaacgagttaattgttgaatcgagtt 327  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| |||| | |||||| ||||||||||    
T  23181186 attttcagttcaagttcggctcatttggttcatgaaccaaattcgacgaatcaattgtcgaatcgagtt 23181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 33280086 - 33279977
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||  |||||||||||||||||||||||||| ||| |||| | |||| | ||||| | || |||||| |  |||| |||||||||||||||    
T  33280086 attttaagctcatattcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactttaatcgagttggttcggttcatt 33279987  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  33279986 gtcagcccta 33279977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 43967547 - 43967616
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaacc-aattcaacgagttaattgttgaatcgagttccgaact 334  Q
    |||||||||||||||| ||||||||||||||| ||||||||||  |||||  ||| ||||||||||||||    
T  43967547 agctcaagttcggctcgtttggttcatgaaccaaattcaacgaactaattactgagtcgagttccgaact 43967616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 9135985 - 9136061
Alignment:
Q  262 tttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactatt 337  Q
    ||||||||||||||| ||| ||||| ||||| |||||| ||||||||||||||||| || ||||||||  |||||||    
T  9135985 tttcagctcaagttcagcttatttgattcataaaccaagttcaacgagttaattgtcgagtcgagttctaaactatt 9136061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 34516169 - 34516269
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||| || | |||||| |||| || || |||||| |  | || |||||||||||||||    
T  34516169 attttcagctcaagttcggctcatttggttgatgaatcaagttcaatgaatcaattgtcgaattgaattacgaactttaattgagttggttcggttcatt 34516268  T
Q  359 g 359  Q
    |    
T  34516269 g 34516269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 27189191 - 27189152
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27189191 attttcagctcaagttcgactcatttggttcatgaaccaa 27189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 379
Target Start/End: Original strand, 39478090 - 39478201
Alignment:
Q  269 tcaagttcggctcatttggttcatgaaccaattc-aacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccct 367  Q
    ||||||||  ||||||||||||||||||||| || || ||   |||| | |||||||||  ||||||||| |||| |||||||||||||||| || ||||    
T  39478090 tcaagttcaactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttcattgccagccct 39478189  T
Q  368 accttcaactaa 379  Q
    ||  ||||||||    
T  39478190 actctcaactaa 39478201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 12378389 - 12378492
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaac 364  Q
    |||||||||||  |||||||||||| |||||||| |||||||| | |||| | ||| ||| |  || |||||| | || || ||||||||||||||||||    
T  12378389 agctcaagttcaactcatttggttcgtgaaccaagttcaacgaatcaattatcgaaccgaatctcggactatttttgagtttgttcggttcattgtcaac 12378488  T
Q  365 ccta 368  Q
    ||||    
T  12378489 ccta 12378492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 24854630 - 24854687
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgt 316  Q
    |||||||||||||||||  |||||||||||||  |||||| || ||||||||||||||    
T  24854630 attttcagctcaagttcaactcatttggttcacaaaccaagtttaacgagttaattgt 24854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 3409297 - 3409188
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  3409297 attttcagctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcatt 3409198  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  3409197 gccagcccta 3409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 44740592 - 44740492
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  44740592 atttttagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcatt 44740493  T
Q  359 g 359  Q
    |    
T  44740492 g 44740492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 24844775 - 24844672
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||  |||||||||| ||||||||| |||| ||||||||| |||||    
T  24844775 attttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtttcgaactattatcgagttggttcggatcatt 24844676  T
Q  359 gtca 362  Q
    ||||    
T  24844675 gtca 24844672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 17616298 - 17616397
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| |||||||||||||||||||||||||||| | ||| ||||||||| ||||||| |||||||||| | ||||||| |||| |||||||| ||||||    
T  17616298 atttttagctcaagttcggctcatttggttcatgtatcaaattcaacgagataattgtcgaatcgagtttctaactattttcgagttggttcgattcatt 17616397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 27902548 - 27902438
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||| |||| | |||||| ||||||| || |||||| |  |||| ||||||||||||| |    
T  27902548 attttcagctcaagttcggttcattttgttcatgaaccaagttcgacgaatcaattgtcgaatcgatttacgaactttaatcgagttggttcggttcaat 27902449  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  27902448 gtcagccctac 27902438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 41332262 - 41332368
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||| |||  |||| |||||| ||||||||| |||||| |||||||||| |||||||||| ||||||||  |||| |||||| ||||||||    
T  41332262 attttcagctcaaattcaactcaattggtttatgaaccaagttcaacaagttaattgtcgaatcgagtttcgaactatattcgagttggtttggttcatt 41332361  T
Q  359 gtcaacc 365  Q
    | |||||    
T  41332362 gccaacc 41332368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 27464681 - 27464572
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||  ||||||||| ||||||||||||||||||||| |||||| | | |||| | ||||| |||  ||||||||| |||| |||||||||||||||    
T  27464681 attttcaattcaagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttcatt 27464582  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  27464581 gtcagcccta 27464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 20203823 - 20203723
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||| ||| | ||||||||||||||||||||| |||||||| | |||||||||||||| || |||||| |  |||| ||||||||||| |||    
T  20203823 attttcagctcaggtttgactcatttggttcatgaaccaagttcaacgaatcaattgttgaatcgaattacgaactttaatcgagttggttcggttaatt 20203724  T
Q  359 g 359  Q
    |    
T  20203723 g 20203723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 17369098 - 17368996
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||| ||||||| ||| || ||||||||||||||||| || | ||||||||||||||  |||| |||| ||||||||||    
T  17369098 attttcaactcaagttcgactcatt-ggttcataaactaaattcaacgagttaattgtcgagttgagttccgaactatattcgagttggctcggttcatt 17369000  T
Q  359 gtca 362  Q
    ||||    
T  17368999 gtca 17368996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 29806950 - 29807047
Alignment:
Q  273 gttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccctac 369  Q
    |||||||||||||||||| | |||||| |||||||| | |||| | |||||||||   |||||||| ||||||||||||||||||||| || ||||||    
T  29806950 gttcggctcatttggttcgtaaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgaattggttcggttcattgccagccctac 29807047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 38409680 - 38409615
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacc-aattcaacgagttaattgttgaatcga 324  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||| |||||||    
T  38409680 attttcagctcaagttcggctcatttggttcatgaaccaaattcgacgaatcaattgtcgaatcga 38409615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 40458952 - 40459061
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||||| |   |||| |||||||||||  | ||||||| || | |||||||||||||||    
T  40458952 attttcaactcaagttcgactcatttggttcgtgaaccaagttcaacaaaccaattattgaatcgagtatcaaactattttcaagttggttcggttcatt 40459051  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  40459052 gtcagcccta 40459061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 11007081 - 11006980
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||||||| | |||| | | |||||||  | ||||||| |||| |||||||||||||||    
T  11007081 attttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaatcaattatcggatcgagt--caaactattttcgagttggttcggttcatt 11006984  T
Q  359 gtca 362  Q
    ||||    
T  11006983 gtca 11006980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 262 - 359
Target Start/End: Original strand, 30713189 - 30713287
Alignment:
Q  262 tttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||| | |||| | ||||||| || |||||  |  |||| ||||||||||||||||    
T  30713189 tttcagctcatgttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgagttggttcggttcattg 30713287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 9963801 - 9963890
Alignment:
Q  271 aagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||| ||||  |||| |||| |||| | ||||||  |||||||||||    
T  9963801 aagttcagctcatttggttcatgaacccagttcaacgagttaattgtcgaattaagtttcgaattattattgaattgactcggttcattg 9963890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 2578110 - 2578178
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagtt 327  Q
    ||||||||||||||||| ||||||||| |||||||| ||| |||||| |||||||||| | ||||||||    
T  2578110 attttcagctcaagttcagctcatttgattcatgaatcaagttcaacaagttaattgtcgcatcgagtt 2578178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 558
Target Start/End: Original strand, 9170146 - 9170325
Alignment:
Q  375 actaaactcgacatgagagttttgaaaattgttttgaatgatttgcttacatgcatatataatactaactaaactcaaagacatcatcaatatatgtcct 474  Q
    |||||| |||| | ||||||||| |||||| |||||||  |    ||||||  |||||||||||| ||| |||||||| ||||| ||| ||| |||| ||    
T  9170146 actaaattcgatacgagagttttaaaaattattttgaaacaacgacttacagacatatataatac-aaccaaactcaatgacattatctatacatgttct 9170244  T
Q  475 aaaagaataacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatat 558  Q
    |||||| |  ||||  ||||| ||||||||| ||||||||||||||  |||  ||| |||||||||||||||| |||| |||||    
T  9170245 aaaagagt--caacaatcttataatctaacaaaaaatctacattatcaaac-caagctttgccacccaatcaaatgtcttatat 9170325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 28968851 - 28968961
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacc-aattcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| ||||| || | ||||||||||||| ||||  ||||||||||||||||| | |||||||||  | ||||||| |||  ||| || ||||||||    
T  28968851 attttcaactcaaatttgactcatttggttcacgaactgaattcaacgagttaattatcgaatcgagtctcaaactattctcgggttgatttggttcatt 28968950  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  28968951 gtcagccctac 28968961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 11027939 - 11028048
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| || ||||||||||||||||||||||||||||||| ||| |||| | |||| | |||| || || |||||| |  | || |||||||||||||||    
T  11027939 atttttagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaattgaattacgaactctaattgagttggttcggttcatt 11028038  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  11028039 gccagcccta 11028048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 34116282 - 34116173
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||||||||||||||||||||||| || ||| || | | |||| || |||||| || |||||| |  |||| ||||||||| |||||    
T  34116282 attttaagctcaagttcggctcatttggttcatgaactaagttcgacaaatcaattattaaatcgaattacgaactctaatcgagttggttcggctcatt 34116183  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  34116182 gccaccccta 34116173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 40680279 - 40680340
Alignment:
Q  298 aattcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||||| |||| | ||||||| |||||||||||| | || ||||||||||||||||    
T  40680279 aattcaacgagtcaattatcgaatcgaattccgaactattattgagttggttcggttcattg 40680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 2647083 - 2647035
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacga 307  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  2647083 atttttagctcaagttcggctcgtttggttcatgaaccaagttcaacga 2647035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 1094488 - 1094527
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  1094488 attttcaactcaagttcgactcatttggttcatgaaccaa 1094527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 14103298 - 14103367
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttc 328  Q
    |||||||| | ||||||| || |||||| ||||||||||| || |||||||||||| |||| ||||||||    
T  14103298 attttcagtttaagttcgacttatttggctcatgaaccaagttaaacgagttaattattgagtcgagttc 14103367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 45383247 - 45383138
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||| ||  || ||||||||||||||| ||| |||| ||||| ||||||||||||||  | |||||||   || | || ||||||||||||    
T  45383247 attttaagctcaaatttagcgcatttggttcatgaatcaagttcatcgagtcaattgttgaatcgaacttcgaactaaattcaagttagttcggttcatt 45383148  T
Q  359 gtcaacccta 368  Q
    ||||| ||||    
T  45383147 gtcaatccta 45383138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 44422010 - 44421901
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  44422010 attttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcatt 44421911  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  44421910 gacagcccta 44421901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 10618957 - 10619055
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcat 357  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||    
T  10618957 attttcagctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattgtcgaatcgagttccaaactattgtcgagttgattcggttcat 10619055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 33124731 - 33124841
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||   ||||||||||||| |||||| ||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||    
T  33124731 attttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactattgtcgagttggttcggttcatt 33124830  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  33124831 gccagccctac 33124841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 222335 - 222226
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||||| |||||||||||||||    
T  222335 attttcagttcaagttcagctcgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcccaaactattgtcgagttggttcggttcatt 222236  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  222235 gccagcccta 222226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 22075099 - 22075208
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| ||||||||||||| |||||||  ||||||||||||||||| |||||||||||  ||||||| |||| |||||||||||||||    
T  22075099 attttcagctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattgtcgaatcgagttctaaactattatcgagttggttcggttcatt 22075198  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  22075199 gccagcccta 22075208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 33935544 - 33935653
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| | ||||||||| || |||||||||||| |||||||| ||||||    
T  33935544 attttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaatcgagtcccaaactattgtcgagttggttcgattcatt 33935643  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  33935644 gccagcccta 33935653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 23227108 - 23227009
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| ||||||||| |||||| ||||| |||||| || ||||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  23227108 attttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcatt 23227009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 23236261 - 23236162
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| ||||||||| |||||| ||||| |||||| || ||||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  23236261 attttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcatt 23236162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 41449794 - 41449884
Alignment:
Q  278 gctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccct 367  Q
    |||||||||| ||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  41449794 gctcatttggatcatgaaccaagttcaacgagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcattgtcagccct 41449884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 48634483 - 48634586
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||    ||||||||||| ||||||||||||| ||| || ||||||||    
T  48634483 atttttagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaatctacgaatcgagttctgaactattgtcgagttgatttggttcatt 48634582  T
Q  359 gtca 362  Q
    ||||    
T  48634583 gtca 48634586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 7447912 - 7448021
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||| || |||| ||  |||||||  |||| |||||||||||||||    
T  7447912 attttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttcatt 7448011  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  7448012 gtcagcccta 7448021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 18250102 - 18250002
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||| | |||| | |||||||||   |||||||| |||| |||||||||||||||    
T  18250102 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggttcggttcatt 18250003  T
Q  359 g 359  Q
    |    
T  18250002 g 18250002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 21760691 - 21760583
Alignment:
Q  261 ttttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||| |||||||||| |||||||||||| ||||| || |||||||| | |||| | |||||||||| ||||||||| |||| |||||||||||||||     
T  21760691 ttttcaactcaagttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcgagtttcgaactattttcgagttggttcggttcatta 21760592  T
Q  360 tcaacccta 368  Q
    ||| |||||    
T  21760591 tcagcccta 21760583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 17025470 - 17025361
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||||||||| |||| | |||||||     |||||||| |||| |||||||||||||||    
T  17025470 attttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgagtcaattatcgaatcgaaccttgaactattttcgagttggttcggttcatt 17025371  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  17025370 gtcagcccta 17025361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 33899053 - 33898944
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| | ||| ||  ||||| | ||||||| |  ||||||||| |||| |||||||||||||||    
T  33899053 attttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttcatt 33898954  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  33898953 gtcagcccta 33898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 36472475 - 36472584
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| | | || | |||||||||  | |  |||| |||| |||||||||||||||    
T  36472475 attttcaactcaagttcggctcatttggttcatgaaccaagttcaacgaatcatttatcgaatcgagtatcaagttattttcgagttggttcggttcatt 36472574  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  36472575 gtcagcccta 36472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 3942212 - 3942322
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||  || |||||||||||||||||||| ||||| || | || ||| ||||||| || |||||| |  |||| |||||||||||||||    
T  3942212 attttcagctcaagtctggttcatttggttcatgaaccaagttcaatgaatcaactgtcgaatcgaattacgaactttaatcgagttggttcggttcatt 3942311  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  3942312 gtcagccctac 3942322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 368
Target Start/End: Original strand, 32356996 - 32357106
Alignment:
Q  259 tattttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcat 357  Q
    |||||||| ||||| |||||||||||| ||||||||| ||| |||||||| |||||| | |||||||||  ||||||||| |  | |||||| |||||||    
T  32356996 tattttcaactcaaattcggctcatttagttcatgaatcaagttcaacgaattaattatcgaatcgagtctcgaactatttttaagttggtttggttcat 32357095  T
Q  358 tgtcaacccta 368  Q
    ||||| |||||    
T  32357096 tgtcagcccta 32357106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 35543665 - 35543555
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||| ||||||||||||| |||||||| | |||| | |||| ||||  | ||||||| |||| |||||||| ||||||    
T  35543665 attttcaactcaagttcgactcatttagttcatgaaccaagttcaacgaatcaattatcgaatggagtctcaaactattttcgagttggttcgattcatt 35543566  T
Q  359 gtcaaccctac 369  Q
    |||| ||||||    
T  35543565 gtcagccctac 35543555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 33171643 - 33171534
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||| ||||||||||||||| || ||| |||||| || |||||||   |||||||| ||||||||| |||| ||||||||| |||||    
T  33171643 atttttagctcaagttcagctcatttggttcataaatcaagttcaacaagataattgtcttatcgagtttcgaactattatcgagttggttcggatcatt 33171544  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  33171543 gccagcccta 33171534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 37334314 - 37334423
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | |||| || |||||||||||||| |||||||  |||| | | ||||||| |  ||||||||  |||| |||||||||||||||    
T  37334314 attttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgaatcgaatgtcgaactataatcgagttggttcggttcatt 37334413  T
Q  359 gtcaacccta 368  Q
    ||||||||||    
T  37334414 gtcaacccta 37334423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 37401675 - 37401566
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||| ||||||||||||||||||| ||| |||||| | | |||| | ||||||| || |||||| |  ||||||||||| ||||||||    
T  37401675 attttcaactcaagtttggctcatttggttcatgaatcaagttcaacaaatcaattttcgaatcgaattacgaactctaatcgaattggtttggttcatt 37401576  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  37401575 gtcagcccta 37401566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 46573721 - 46573612
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| || ||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||| |  |||| |||| | || |||||||||||||||    
T  46573721 attttcaacttaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattatttttgagttggttcggttcatt 46573622  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  46573621 gccagcccta 46573612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 18740327 - 18740227
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| || || |||| |||| |  |||||| |  ||||||||| |||| |||||||||||||||    
T  18740327 attttcaactcaagttcgactcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttcgagttggttcggttcatt 18740228  T
Q  359 g 359  Q
    |    
T  18740227 g 18740227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 11595899 - 11595796
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaac 364  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||||   || |||||||||||||| |  |||| |||  |||||||||||||| |    
T  11595899 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgtcagc 11595800  T
Q  365 ccta 368  Q
    ||||    
T  11595799 ccta 11595796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 26719851 - 26719954
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| | ||| ||   |||| | |||||||||  ||||||||| |||| |||||||| ||||||    
T  26719851 attttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattcatt 26719950  T
Q  359 gtca 362  Q
    ||||    
T  26719951 gtca 26719954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 24128589 - 24128503
Alignment:
Q  280 tcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacc 365  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| ||||||||| |||  |||| |  ||||||||||||| |||||    
T  24128589 tcatttggttcatgaaccaaattcaacgagttaattatcgaatcaagttccgaaatatgttcgagtgtgttcggttcattgccaacc 24128503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 49034333 - 49034224
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||   ||||   ||||||| || ||||||||| |||| |||| ||||||| ||    
T  49034333 attttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgagttggatcggttcgtt 49034234  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  49034233 gccagcccta 49034224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 17608748 - 17608847
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||| |||||||||||||||||||||||| |||||| ||| |||| | ||   ||||||||| || |||||| || |||| ||| |||||||||||    
T  17608748 attttcagatcaagttcggctcatttggttcatcaaccaagttcgacgaatcaa---ttgaatcgaattacgaacttttatcgagttgattcggttcatt 17608844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 33019337 - 33019440
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| || ||||| ||| |||||||| ||||||||   |||| | |||||||||  ||||||||| | || |||||||||||||||    
T  33019337 attttcaactcaagttcgacttatttgattcgtgaaccaagttcaacgaaccaattatcgaatcgagtatcgaactatttttgagttggttcggttcatt 33019436  T
Q  359 gtca 362  Q
    ||||    
T  33019437 gtca 33019440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 45055770 - 45055864
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||||   || |||||||||||||| |  |||| |||  |||||||||||    
T  45055770 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 45055864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 5776239 - 5776130
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||| | |||| || |||||||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  5776239 attttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 5776140  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  5776139 gccaacccta 5776130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 33140905 - 33140812
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||| | ||||||  |||||||||||| |||||||||||||||||  | |||| |||||||||||  |||| |||  ||||||||||    
T  33140905 agctcaagttcagttcatttcattcatgaaccaagttcaacgagttaattgtcaagtcgaattccgaactatgttcgagttgactcggttcatt 33140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 37106862 - 37106971
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||| ||||||||||||||||||||||| ||| ||| || ||| |||| |||||| | ||||||| || |||||| |  | || | |||||||||||||    
T  37106862 atttttagctcaagttcggctcatttggtacattaactaagttcgacgaattaattatcgaatcgaattacgaactctaattgagtcggttcggttcatt 37106961  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  37106962 gccaacccta 37106971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 43052908 - 43053017
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||| |||||||| | ||||||| |||||||||||||| |||||||  |||| | | || |||| |  ||||||||  |||| |||||||||||||||    
T  43052908 attttcggctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcatt 43053007  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  43053008 gccaacccta 43053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 37250070 - 37250107
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaacc 297  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  37250070 attttcagctcaagtgcggctcatttggttcattaacc 37250107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 45176281 - 45176382
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||| |||||| |||| ||||||||||||||||| |||||||  |||||| | || |||| |  | ||||||  |||| || ||||||||||||    
T  45176281 attttcagctaaagttcagctcgtttggttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttcatt 45176380  T
Q  359 gt 360  Q
    ||    
T  45176381 gt 45176382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 20401102 - 20401142
Alignment:
Q  329 cgaactattgtcgaattggttcggttcattgtcaaccctac 369  Q
    ||||||||  |||| ||||||||||||||||||||||||||    
T  20401102 cgaactatattcgagttggttcggttcattgtcaaccctac 20401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 29037889 - 29037853
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaac 296  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  29037889 attttcaactcaagttcgtctcatttggttcatgaac 29037853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 1501879 - 1501988
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||  ||||||||| ||||| |||||||| |||||||||||||||    
T  1501879 attttcagctcaagttcggttcatttggttcatgaacgaagttcaacgagttaattgtcaaatcgagtttcgaacaattgtcgagttggttcggttcatt 1501978  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  1501979 gtcagcccta 1501988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 4441410 - 4441310
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| ||||||||| |||||||| |||| |||||||| ||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  4441410 attttcaactcaagttcagctcatttagttcgtgaaccaagttcaacgagctaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcatt 4441311  T
Q  359 g 359  Q
    |    
T  4441310 g 4441310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 5640361 - 5640251
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| |||| | |||| | ||||||| || |||||| |  |||| |||||||||||||||    
T  5640361 attttcagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttcatt 5640262  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  5640261 gccagccctac 5640251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 17441189 - 17441298
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||  |||||||||||||||||| || |||||||| ||||||    ||||||||| ||||||||| |||  |||||||||||||||    
T  17441189 attttcaactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttcgggttggttcggttcatt 17441288  T
Q  359 gtcaacccta 368  Q
    | ||||||||    
T  17441289 gccaacccta 17441298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 11460102 - 11460014
Alignment:
Q  281 catttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    ||||||||||||||||||| |||||||| | |||| | |||||||||||||||||||| | || |||| ||||||||||| ||||||||    
T  11460102 catttggttcatgaaccaagttcaacgaatcaattatcgaatcgagttccgaactattattgagttggatcggttcattgccaacccta 11460014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 3081827 - 3081717
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| |||||||||||| |||||||| ||||||||   |||| | |||||||||  ||||||||| ||||  ||||||||||||||    
T  3081827 attttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcgaatcgagtatcgaactattttcgagctggttcggttcatt 3081728  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  3081727 gccagccctac 3081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 6999298 - 6999400
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||||||| |||||||| |||||| |||||| |||||||| |||||| | |||||||||  | |||||||||||| ||| |||| || |||    
T  6999298 attttcagctcaagttcagctcatttagttcattaaccaagttcaacgaattaattatcgaatcgagtctcaaactattgtcgagttgcttcgatttatt 6999397  T
Q  359 gtc 361  Q
    |||    
T  6999398 gtc 6999400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 10961905 - 10961796
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||| | |||||| ||||| | || | |||| |  |||| |||||||||||||||    
T  10961905 attttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttcatt 10961806  T
Q  359 gtcaacccta 368  Q
    | || |||||    
T  10961805 gccagcccta 10961796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 5997756 - 5997800
Alignment:
Q  129 caacattggtcatgtaagaactagttgttgtaggttcgatcctcg 173  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  5997756 caacaatggtcatgtaagaattagttgttgtaggttcgatcctcg 5997800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 9950869 - 9950830
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa 299  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9950869 attttcaactcaagttcggctcatttggttcatgaaccaa 9950830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 13312053 - 13312164
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgag--ttccgaactattgtcgaattggttcggttca 356  Q
    ||||||| |||||||||| ||||||||||||||||||||| | ||| ||   |||| | ||||||||  |  ||||||||| |||| |||||||||||||    
T  13312053 attttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatatcgaactattttcgagttggttcggttca 13312152  T
Q  357 ttgtcaacccta 368  Q
    ||| || |||||    
T  13312153 ttgccagcccta 13312164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 27984999 - 27984931
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagtt 327  Q
    |||||||| |||||||||||||||||||||||| |||||| ||| |||| | |||||| |||| |||||    
T  27984999 attttcagttcaagttcggctcatttggttcataaaccaagttcgacgaatcaattgtcgaattgagtt 27984931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 7437335 - 7437434
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| || ||||||| |||||||||||| |||||||| ||||||||    ||| | |||||||||  ||||||||| |||| || ||||||||||||    
T  7437335 attttcaactaaagttcgactcatttggttcgtgaaccaagttcaacgaacccattatcgaatcgagtatcgaactattttcgagttagttcggttcatt 7437434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 8694459 - 8694416
Alignment:
Q  136 ggtcatgtaagaactagttgttgtaggttcgatcctcgacatcc 179  Q
    |||||||||||||||||||||||  ||||||||||||| |||||    
T  8694459 ggtcatgtaagaactagttgttgctggttcgatcctcggcatcc 8694416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 12428925 - 12429007
Alignment:
Q  278 gctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    ||||| ||||||||| |||||| |||||| |||| ||||| || |||||||| |||||||  | || ||||||||||||||||    
T  12428925 gctcagttggttcataaaccaagttcaacaagttcattgtcgagtcgagttctgaactatatttgagttggttcggttcattg 12429007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 33110495 - 33110589
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||  |||||   || |||||||||||||| |  |||| |||  |||||||||||    
T  33110495 agcttaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 33110589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 22295953 - 22295986
Alignment:
Q  266 agctcaagttcggctcatttggttcatgaaccaa 299  Q
    |||||||||||||||| |||||||||||||||||    
T  22295953 agctcaagttcggctcgtttggttcatgaaccaa 22295986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 13842192 - 13842244
Alignment:
Q  115 ccattatcacacttcaacattggtcatgtaagaactagttgttgtaggttcga 167  Q
    |||| |||| || |||||| || ||||||||||| ||||||||||||||||||    
T  13842192 ccatcatcaaacctcaacactgatcatgtaagaattagttgttgtaggttcga 13842244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 18099855 - 18099951
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaa 363  Q
    ||||| |||| |||||||||||| |||||||| |||||||| |  ||| | |||||||||  | |||| || |||| |||||| |||||||||||||    
T  18099855 ctcaaattcgactcatttggttcgtgaaccaagttcaacgaatccattatcgaatcgagtctcaaacttttttcgagttggtttggttcattgtcaa 18099951  T

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Target: scaffold0224 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 7417 - 7307
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| | |||| | ||||||| || |||||  |  ||||||||||||||||||||    
T  7417 attttcagctcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcatt 7318  T
Q  359 gtcaaccctac 369  Q
    | || ||||||    
T  7317 gccacccctac 7307  T

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Target: scaffold0171 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 21119 - 21227
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    ||||||| |||||||||| ||| ||||||||||||||||| |||||||| | |||| | |||||||||  ||||||||| |||| |||||||||||||||    
T  21119 attttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcatt 21217  T
Q  359 gtcaacccta 368  Q
    |||| |||||    
T  21218 gtcagcccta 21227  T

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Target: scaffold0025 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 11440 - 11524
Alignment:
Q  279 ctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtca 362  Q
    |||||||||||||||||| || ||| ||||| ||||||| |||||||||||| ||||||| |||| |||||||||||||||||||    
T  11440 ctcatttggttcatgaactaagttcgacgaggtaattgtcgaatcgagttccaaactattatcgagttggttcggttcattgtca 11524  T

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Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 26730 - 26619
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcatt 358  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||| | | | |||| ||||||| || |||||| |  | || |||||||| ||||||    
T  26730 attttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcatt 26631  T
Q  359 gtcaaccctacc 370  Q
    |||| |||||||    
T  26630 gtcagccctacc 26619  T

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Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 14477 - 14566
Alignment:
Q  280 tcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaacccta 368  Q
    |||||||||||||||||||| ||||| || | ||||   |||||||||| ||||||||| |||  ||||||||||||||||||| |||||    
T  14477 tcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttcattgtcagcccta 14566  T

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Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 32884 - 32782
Alignment:
Q  268 ctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattgtcaaccc 366  Q
    |||||||||| ||||||||||   |||||||| ||||||||   |||||| |||||||||  ||||||||| |||| |||||||||||||||| |||| |    
T  32884 ctcaagttcgactcatttggtg--tgaaccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggttcggttcattgccaacgc 32787  T
Q  367 tacct 371  Q
    |||||    
T  32786 tacct 32782  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 124586 - 124490
Alignment:
Q  264 tcagctcaagttcggctcatttggttcatgaaccaa-ttcaacgagttaattgttgaatcgagttccgaactattgtcgaattggttcggttcattg 359  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |    |||||| || || | || ||||||||  |||| ||||||||||||||||    
T  124586 tcagctcaagttcgactcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattg 124490  T

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Target: scaffold0260 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 10020 - 10077
Alignment:
Q  260 attttcagctcaagttcggctcatttggttcatgaa-ccaattcaacgagttaattgt 316  Q
    ||||||| || |||||||||||||||||| |||||| | |||||||||| ||||||||    
T  10020 attttcatcttaagttcggctcatttggtacatgaatcaaattcaacgaattaattgt 10077  T

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