View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_high_5 (Length: 501)
Name: NF20448_high_5
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 12567526 - 12567998
Alignment:
| Q |
18 |
ttatcatatttggttcctaggacactttcatattatttgttaattaccatatcaagtaaacaatgatacctttttatgtcttataaacaagatgcaatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12567526 |
ttatcatatttggttcctaggacactttcatattgtttgttaattaccatatcaagtaaactatgatacctttttatgtcttataaacaagatgcaatgg |
12567625 |
T |
|
| Q |
118 |
ttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaagacaagggcatagcaatagtaacaatgagt |
217 |
Q |
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| T |
12567626 |
ttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaagacaagggcagagcaatagtaacaatgagt |
12567725 |
T |
|
| Q |
218 |
tggtatatgtcgcaaattgctgcatgtgattcagaaagtagcaaacaattatgggccccacattgatatgagtcaactcacatatcgtctactaaacgac |
317 |
Q |
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||||||||||| |||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12567726 |
tggtatatgtcccaaattgctgcatgtgatcaagaaagtatcaaacaaatatggaccccacattgatatgagtcaactcacatatcgtctactaaacgac |
12567825 |
T |
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| Q |
318 |
atccttctaattaattgaaaagacccctcaaatcacaagattcacaaattcctcaatttcactcatagtaagacataaaatatatataacccatgattaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12567826 |
atccttctaattaattgaaaagacccctcaaatcacaagattcacaaattcctcaatttcactcatagtaagacataaaatatatataacccatgattaa |
12567925 |
T |
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| Q |
418 |
gttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcattata |
490 |
Q |
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| T |
12567926 |
gttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcattata |
12567998 |
T |
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