View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_1 (Length: 736)
Name: NF20448_low_1
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 630
Target Start/End: Original strand, 25144194 - 25144813
Alignment:
| Q |
19 |
atagaaacgtttaaaaactgaattggacaattcaactggttgaatcgtgaatagatcctatttatggtttgattatttgagcaattcgatcgtgattatg |
118 |
Q |
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| T |
25144194 |
atagaaacgtttaaaaactgaattggacgattcaactggttgaatcgtgaatagatcctatttatggtttgattatttgagcaattcgatcgtggttatg |
25144293 |
T |
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| Q |
119 |
tcggtttaaaagttgaactatgatttagatgtctta---------ccggttcaatgtctagtttggtttctaaatcattagttcacgagagaaatatcaa |
209 |
Q |
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| T |
25144294 |
ccggtttaaaagttgaactatgatctagatgtcttcaactatgatctagttcaatgtctagtttggtttctaaatcattagttcacgagagaaatatcaa |
25144393 |
T |
|
| Q |
210 |
atgatcaatcataccaacaaagagttctaaataaatttagtggtagagatgtttgcnnnnnnnnnntcttttgttgattaatgtttgcaatatttactat |
309 |
Q |
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| T |
25144394 |
atgatcaatcataccaacaaagagttctaaataaatttagtggtagagatgtttgcaaaaaaaa---ctgttgttgattaatgtttgcaatatttactat |
25144490 |
T |
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| Q |
310 |
gatagaacttatgacatttttctttttgtctaagagactttcatatttgaaggcaactttagacttcattgatttgaataaagatcatgattgttgaata |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25144491 |
gatagaacttatgacatttttctttttgtctaagagactttcatatttgaaggcaactttagacttcattgatttgaataaagatcaagattgttgaata |
25144590 |
T |
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| Q |
410 |
ggatttgatgatttgtattatgacgtcaccaaatctattttaaaacacaacttgatatgtaggttgtgtga---tttttattcaacaatcaaaattcatg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
25144591 |
ggatttgatgatttgtattatgacgtcaccaaatctattttaaaacacaacttgatatgtaggttgtgtgattttttttattcaaaaatcaaaattcatg |
25144690 |
T |
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| Q |
507 |
aaagcgtgaatgcatgacccttcaacttgacttgagaaaaatttaaaactaagctctttgatacttggactaacaaatatgatttgtcaaacttatttat |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
25144691 |
aaagcgtgaatgcatgacccttcaacttgacttgagaaaaatttaaaactaagctctttgatacttggactaac-aatttgatttgtcaaacttatttat |
25144789 |
T |
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| Q |
607 |
aattgcattatccttctctttttt |
630 |
Q |
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| T |
25144790 |
aattgcattatccttctctttttt |
25144813 |
T |
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