View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_11 (Length: 320)
Name: NF20448_low_11
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 34329084 - 34329295
Alignment:
| Q |
1 |
aaacacacactatttgagacctttgaaattgaataaacnnnnnnnnnnnnnncatgacccttgcaatgtaacatttgaagggtgcatgcatcaacatcaa |
100 |
Q |
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| T |
34329084 |
aaacacacactatttgagacctttgaaattgaataaacaaaaaacaaaaaaacatgacccttgcaatgtaacatttgaagggtgcatgcatcaacatcaa |
34329183 |
T |
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| Q |
101 |
aatgaaacaactatgtcgcaaaagcaaaagaagtaacacgaggtgtattgttgctatttctttgatgagaatgagaagacctagcaagtggtggtttatt |
200 |
Q |
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| T |
34329184 |
aatgaaacaactatgtcgcaaaagcaaaagaagtaacacgaggtgtattgttgctatttctttgatgagaatgagaagacctagcaagtggtggtttatt |
34329283 |
T |
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| Q |
201 |
aatatttacacc |
212 |
Q |
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|||||||||||| |
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| T |
34329284 |
aatatttacacc |
34329295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 34329289 - 34329361
Alignment:
| Q |
230 |
ttacaccaccaccattcacttgtttccatgctgacgtggcccctctttgtccctcacatttcactggctgtgg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329289 |
ttacaccaccaccattcacttgtttccatgctgacgtggcccctctttgtccctcacatttcactggctgtgg |
34329361 |
T |
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