View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20448_low_13 (Length: 288)

Name: NF20448_low_13
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20448_low_13
NF20448_low_13
[»] chr8 (10 HSPs)
chr8 (57-273)||(31498439-31498651)
chr8 (50-273)||(1236101-1236320)
chr8 (57-273)||(15552328-15552536)
chr8 (64-271)||(17915077-17915273)
chr8 (80-273)||(21356062-21356248)
chr8 (211-273)||(29410990-29411052)
chr8 (211-273)||(16847861-16847923)
chr8 (57-115)||(7000279-7000336)
chr8 (211-273)||(27592574-27592636)
chr8 (57-115)||(34752161-34752217)
[»] chr4 (12 HSPs)
chr4 (71-273)||(34413229-34413426)
chr4 (28-144)||(49228845-49228961)
chr4 (152-273)||(49228231-49228348)
chr4 (61-273)||(13938725-13938932)
chr4 (86-273)||(53189431-53189613)
chr4 (211-273)||(46109076-46109138)
chr4 (211-273)||(50390837-50390899)
chr4 (211-273)||(52772358-52772420)
chr4 (220-273)||(1717243-1717296)
chr4 (212-273)||(52606110-52606171)
chr4 (211-273)||(15666641-15666703)
chr4 (57-115)||(123091-123148)
[»] chr7 (10 HSPs)
chr7 (57-273)||(28164767-28164975)
chr7 (212-273)||(45110900-45110961)
chr7 (213-273)||(47880064-47880124)
chr7 (215-273)||(29712871-29712929)
chr7 (211-273)||(34592952-34593014)
chr7 (211-273)||(48384963-48385025)
chr7 (57-115)||(6567976-6568034)
chr7 (57-115)||(28303185-28303242)
chr7 (233-273)||(29670452-29670492)
chr7 (205-273)||(44156834-44156902)
[»] chr5 (15 HSPs)
chr5 (57-273)||(14043152-14043362)
chr5 (180-273)||(36836755-36836848)
chr5 (194-271)||(5540201-5540278)
chr5 (59-140)||(36836912-36836991)
chr5 (55-138)||(5540092-5540172)
chr5 (60-144)||(10032030-10032113)
chr5 (194-273)||(10023782-10023860)
chr5 (211-273)||(35467821-35467883)
chr5 (211-273)||(5713062-5713124)
chr5 (211-273)||(10831200-10831262)
chr5 (211-273)||(10833279-10833341)
chr5 (212-273)||(23616323-23616384)
chr5 (212-273)||(23847720-23847781)
chr5 (220-273)||(10862874-10862927)
chr5 (71-115)||(7329692-7329735)
[»] chr1 (11 HSPs)
chr1 (68-273)||(39487501-39487699)
chr1 (81-262)||(931775-931953)
chr1 (211-273)||(23860807-23860869)
chr1 (211-273)||(26246158-26246220)
chr1 (211-273)||(36834650-36834712)
chr1 (212-273)||(38929105-38929166)
chr1 (215-273)||(9614574-9614632)
chr1 (211-273)||(47779042-47779104)
chr1 (211-273)||(51562007-51562069)
chr1 (211-273)||(7860962-7861024)
chr1 (96-138)||(14762512-14762554)
[»] chr2 (5 HSPs)
chr2 (57-265)||(32742067-32742263)
chr2 (61-273)||(37904557-37904760)
chr2 (211-273)||(8740731-8740793)
chr2 (197-273)||(12314245-12314320)
chr2 (57-115)||(41581542-41581599)
[»] chr3 (8 HSPs)
chr3 (91-274)||(43423999-43424179)
chr3 (68-140)||(52581974-52582045)
chr3 (211-273)||(41331917-41331979)
chr3 (211-273)||(51058102-51058164)
chr3 (211-273)||(41993923-41993985)
chr3 (211-273)||(43020707-43020769)
chr3 (57-115)||(36472198-36472256)
chr3 (212-273)||(34022225-34022286)
[»] chr6 (4 HSPs)
chr6 (194-273)||(647882-647961)
chr6 (211-273)||(1251933-1251995)
chr6 (60-137)||(647759-647833)
chr6 (212-266)||(13853879-13853933)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 273
Target Start/End: Original strand, 31498439 - 31498651
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattt 156  Q
    |||| |||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||       |||||    
T  31498439 tccgatctcaaatgtaagaaacaaaaaaataatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatattttttcaattt 31498538  T
Q  157 tacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactata 256  Q
    |||| || |||||  ||||||||    || ||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  31498539 taccctttttttggagtagtaaa----gacattaatgataaagtgagtttaatgagggtaaactttgaattgtgacatttaataggttcattttactata 31498634  T
Q  257 ctttttcttatatttga 273  Q
    |||||||||||||||||    
T  31498635 ctttttcttatatttga 31498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 1236101 - 1236320
Alignment:
Q  50 tatttcatccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnn 149  Q
    ||||||||| ||  |||||| ||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||         
T  1236101 tatttcatctggaatcaaatgtaagaaacaaaaaaataatacacatgtattaagaaagtggattgaccacatttaagtcattataaaaagtgatattttt 1236200  T
Q  150 nnaattttacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattt 249  Q
      ||||||||| |||| |||  ||||||||    ||  |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  1236201 tcaattttacccttgtcttggagtagtaaa----gaccttaatgatgaagtgagtttaatgagggtaaatttggaattgtgacatttaataggttcattt 1236296  T
Q  250 tactatactttttcttatatttga 273  Q
    ||||||||||||||||||||||||    
T  1236297 tactatactttttcttatatttga 1236320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 273
Target Start/End: Complemental strand, 15552536 - 15552328
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattt 156  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||       |||||    
T  15552536 tccggtctcaaatgtaagaaacaaaaaa-aaatacacacatattaagaaagtggattgaccacatttaagtcattgtaaaaagtgatatttttctaattt 15552438  T
Q  157 tacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactata 256  Q
    |||| |||| |||  ||||||||    || |||||||| |   |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  15552437 tacccttgtcttgaagtagtaaa----gacattaatgagg---tgggtttaatgagggtaaacttggaattgttgcatttaataggttcattttactata 15552345  T
Q  257 ctttttcttatatttga 273  Q
    |||||||||||||||||    
T  15552344 ctttttcttatatttga 15552328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 271
Target Start/End: Complemental strand, 17915273 - 17915077
Alignment:
Q  64 tcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttaccttt 163  Q
    |||||| ||||||||||||||    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||       | ||||||| ||    
T  17915273 tcaaatgtaagaaacaaaaaa----tgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatatttttctagttttaccctt 17915178  T
Q  164 gttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttc 263  Q
    || |||  |||||||||| |     | |  |||| ||||||||||||||||||||| | ||||||||||||||||||| ||  |||||||||||||||||    
T  17915177 gtcttggagtagtaaataca-----tca--atgaggtgggtttaatgagggtaaacctagaattgtggcatttaatagattcgttttactatactttttc 17915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 273
Target Start/End: Complemental strand, 21356248 - 21356062
Alignment:
Q  80 aaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacctttgttttgttgtagtaaa 179  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |       || |||||| |||| |||  ||||||||    
T  21356248 aaaaaaaaatgcacacatattaagaaagtggattgaccatatttaagtcattataaaatgtgaaatttttctaaatttacccttgtcttggagtagtaaa 21356149  T
Q  180 taaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
        || |||| ||| |   || |||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  21356148 ----gacattattgagg---tgagtttaatgagggtaaatttgaaattgtggcatttaatagatttattttactatactttttcttatatttga 21356062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 29411052 - 29410990
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  29411052 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 29410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 16847923 - 16847861
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||  ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  16847923 agggtaacattggaatagtagcatttattaggttgtttttactatactttttcttacatttga 16847861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 7000336 - 7000279
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||| |||| ||||||||||||||||||||    
T  7000336 tccggtcttgaatgtaagaaacaaaaaaaaaat-cacacatattaagaaagtggattga 7000279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 27592636 - 27592574
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| |||||||||| ||| ||  |||||||||||||||||| | ||||||    
T  27592636 agggtaaaattggaatagtggcatttattagtttacttttactatactttttctaacatttga 27592574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 34752217 - 34752161
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  34752217 tccggtcttgaatgtaagaaacaaaaaa-aaat-cacatatattaagaaagtggattga 34752161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 71 - 273
Target Start/End: Complemental strand, 34413426 - 34413229
Alignment:
Q  71 taagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacctttgttttgt 170  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||       |||| |||| ||||||||     
T  34413426 taagaaacaaaaaagaaatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtaatatttttc-aattataccattgttttgg 34413328  T
Q  171 tgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatt 270  Q
     | ||||||    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  34413327 agcagtaaa----gacattaatgatgaagtgggtttaatgaggataaacttggaattgtggcatttaataggttcattttactatattttttcttatatt 34413232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 49228961 - 49228845
Alignment:
Q  28 tcttaatttttgagctaaataatatttcatccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagt 127  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49228961 tcttaatttttgagctaaataatatttcatccgatctcaaatataagaaacaaaaaagaaatgcacacatattaagaaagtggattgaccacatttaagt 49228862  T
Q  128 tattataaaaagtgata 144  Q
    |||||||||||||||||    
T  49228861 tattataaaaagtgata 49228845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 49228348 - 49228231
Alignment:
Q  152 aattttacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgatttta 251  Q
    ||||||||||||||||||  ||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  49228348 aattttacctttgttttggagtagtaaa----gatattaatgatgaagtgggtttaatgagggtaaaattggaattgtggcatttaataggttcatttta 49228253  T
Q  252 ctatactttttcttatatttga 273  Q
    ||||||||||||||||||||||    
T  49228252 ctatactttttcttatatttga 49228231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 13938725 - 13938932
Alignment:
Q  61 gtctcaaatataagaaacaaaaaag-aaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttac 159  Q
    |||||| || ||||||||||||||  ||| |||||  || ||||||| |||||||||||||||||||| ||||||||  ||||||       ||||||||    
T  13938725 gtctcatatgtaagaaacaaaaaaacaaaagcacacgtaataagaaaatggattgaccacatttaagtaattataaa--gtgatatttttccaattttac 13938822  T
Q  160 ctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactt 259  Q
    | |||| |||| |||||| |    || ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  13938823 ccttgtcttgtagtagtaga----gacattaacgatgaagtgggtttaatgagggtaaacttgggatagtggcatttaataggttcattttactatactt 13938918  T
Q  260 tttcttatatttga 273  Q
    ||||||||||||||    
T  13938919 tttcttatatttga 13938932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 53189431 - 53189613
Alignment:
Q  86 aaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacctttgttttgttgtagtaaataaaga 185  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||        ||||||||| ||||  ||  ||||||||    ||    
T  53189431 aaatacacacatattaagaaagtggattgaccacatttaagtcattataaaa-gtgatgtttttccaattttacccttgtcctggagtagtaaa----ga 53189525  T
Q  186 tattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
      ||||||||||||||||||||||||||||||||||   |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  53189526 cgttaatgatgaagtgggtttaatgagggtaaacttcatattgcggcatttaataggttcattttactatactttttcttatatttga 53189613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 46109138 - 46109076
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  46109138 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 46109076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 50390899 - 50390837
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  50390899 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 50390837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 52772420 - 52772358
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  52772420 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 52772358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 1717296 - 1717243
Alignment:
Q  220 ttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||| ||||||    
T  1717296 ttggaatagtagcatttattaggttgattttactatactttttcttacatttga 1717243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 52606110 - 52606171
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  52606110 gggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttga 52606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 15666641 - 15666703
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||| ||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  15666641 agggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttga 15666703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 123091 - 123148
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||| |||| ||||||||||||||||||||    
T  123091 tccggtcttgaatgtaagaaacaaaaaaaaaat-cacacatattaagaaagtggattga 123148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 273
Target Start/End: Original strand, 28164767 - 28164975
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattt 156  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||       |||||    
T  28164767 tccggtctcaaatgtaagaaacaaaaaa-aaatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatatttttctaattt 28164865  T
Q  157 tacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactata 256  Q
    |||| |||| |||  ||||    |||||| ||||   |||| |||| |||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  28164866 tacccttgtcttgaagtag----taaagacatta---atgaggtggatttaatgagggtaaaactggaattgtggcatttaataggttcattttactata 28164958  T
Q  257 ctttttcttatatttga 273  Q
    |||||||||||||||||    
T  28164959 ctttttcttatatttga 28164975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 45110900 - 45110961
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  45110900 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 45110961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 47880064 - 47880124
Alignment:
Q  213 ggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  47880064 ggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 47880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 29712929 - 29712871
Alignment:
Q  215 taaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  29712929 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 29712871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 34593014 - 34592952
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||  ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  34593014 agggtaacattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 34592952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 48384963 - 48385025
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||  ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  48384963 agggtaacattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 48385025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 6567976 - 6568034
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||  |||| ||||||||||||||||||||    
T  6567976 tccggtcttgaatgtaagaaacaaaaaaaaaaatcacacatattaagaaagtggattga 6568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 28303242 - 28303185
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    |||||||| |||| |||||||||||||| | || |||| ||||||||||||||||||||    
T  28303242 tccggtcttaaatgtaagaaacaaaaaaaatat-cacacatattaagaaagtggattga 28303185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 29670492 - 29670452
Alignment:
Q  233 atttaataggttgattttactatactttttcttatatttga 273  Q
    |||| ||| ||| ||||||||||||||||||||||||||||    
T  29670492 atttcatatgttcattttactatactttttcttatatttga 29670452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 44156834 - 44156902
Alignment:
Q  205 ttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||||||||| ||||||| |||  |||||||||| ||  |||| ||||||||| |||| ||||||    
T  44156834 ttaatgagggtaaaattggaatagtgatatttaataggatggctttagtatacttttgcttacatttga 44156902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 57 - 273
Target Start/End: Original strand, 14043152 - 14043362
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattt 156  Q
    ||||||||||||| ||||||||||||||  ||| |||| || |||||||||||||||||||| |||||||  ||||||||||||||||       |||||    
T  14043152 tccggtctcaaatgtaagaaacaaaaaaataatacacacatgttaagaaagtggattgaccatatttaagacattataaaaagtgatattttttcaattt 14043251  T
Q  157 tacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactata 256  Q
    |||| |||| |||  |||||      ||| ||||||||||||||| |||||||||||||||||||  |||||| |||||||||  ||| ||||| |||||    
T  14043252 tacccttgtcttggagtagt------agacattaatgatgaagtgagtttaatgagggtaaacttaaaattgtcgcatttaatttgttcattttgctata 14043345  T
Q  257 ctttttcttatatttga 273  Q
     ||||||||||||||||    
T  14043346 ttttttcttatatttga 14043362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 36836848 - 36836755
Alignment:
Q  180 taaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  36836848 taaagacattaatgatgaagtgggtttagtgagggtaaacttggaattgtggcatttaataggttcattttactatacattttcttatatttga 36836755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 5540201 - 5540278
Alignment:
Q  194 atgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatattt 271  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  5540201 atgaagtgggtttaatgtgggtaaacttggaattgtggcatttaataggttcattttactatactttttctcatattt 5540278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 36836991 - 36836912
Alignment:
Q  59 cggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagt 140  Q
    ||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  36836991 cggtctcaaatataagagagaaaaaa--aatgcacatatattaagaaagtggattgaccatatttaagtcattataaaaagt 36836912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 5540092 - 5540172
Alignment:
Q  55 catccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaa 138  Q
    ||||||||||||||| |||||||||||||| |||   |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  5540092 catccggtctcaaatgtaagaaacaaaaaaaaaa---acatatattaagaaagtggattgatcacatttaagtcattataaaaa 5540172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 10032113 - 10032030
Alignment:
Q  60 ggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgata 144  Q
    |||||||||| |||||||||||||| |||| |||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  10032113 ggtctcaaatgtaagaaacaaaaaaaaaat-cacacatattaagaaagtagattgatcacatttaagtcattataaaaagtgata 10032030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 10023860 - 10023782
Alignment:
Q  194 atgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||| ||||||||||| |||||||||||| ||||||| || |||||||||| | ||||||||| ||||||||||||||||    
T  10023860 atgaggtgggtttaataagggtaaacttgaaattgtgacacttaataggttca-tttactataatttttcttatatttga 10023782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 35467821 - 35467883
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||||||||||| |||||||||||||||||||| ||||||    
T  35467821 agggtaaaattggaatagtagcatttaataggttgcttttactatactttttcttacatttga 35467883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 5713062 - 5713124
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  5713062 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 5713124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 10831262 - 10831200
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  10831262 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 10831200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 10833279 - 10833341
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  10833279 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 10833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 23616323 - 23616384
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  23616323 gggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttga 23616384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 23847720 - 23847781
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  23847720 gggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttga 23847781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 10862874 - 10862927
Alignment:
Q  220 ttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  10862874 ttggaatagtagcatttattaggttgcttttactatactttttcttacatttga 10862927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 7329692 - 7329735
Alignment:
Q  71 taagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||    
T  7329692 taagaaacaaaaaaaaaat-cacacatattaagaaagtggattga 7329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 39487501 - 39487699
Alignment:
Q  68 atataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacctttgttt 167  Q
    ||||||||||||||||| |  | |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||       ||||||||| ||||||    
T  39487501 atataagaaacaaaaaaaatttacacacatattaagaaagtggattgatcacatttaagtcattataaaaagtgatatttttctaattttacccttgttt 39487600  T
Q  168 tgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttat 267  Q
    ||  ||||    |||||| |||||||| ||  || |||||||||||||||| |||||||| || ||||||||||||| ||||||||||| ||||||||||    
T  39487601 tggagtag----taaagacattaatga-ga--tgtgtttaatgagggtaaatttggaattctgacatttaataggttcattttactatattttttcttat 39487693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 931953 - 931775
Alignment:
Q  81 aaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnn-aattttacctttgttttgttgtagtaaa 179  Q
    |||| ||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||        ||||||||| |||| |||  ||||||||    
T  931953 aaaaaaaatgcacacatattaagaaagtagattgatcacatttaagtcattataaaaagtgatattttttgcaattttacccttgtcttggagtagtaaa 931854  T
Q  180 taaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatacttttt 262  Q
        || ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||| || | |||| ||||||||||    
T  931853 ----gacattaatgataaagtgactttaatgagggtaaacttagaattgtggcatttaatagattcaatttagtatacttttt 931775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 23860807 - 23860869
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  23860807 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 23860869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 26246220 - 26246158
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  26246220 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 26246158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 36834712 - 36834650
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  36834712 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 36834650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 38929166 - 38929105
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  38929166 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 38929105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 9614632 - 9614574
Alignment:
Q  215 taaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  9614632 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 9614574  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 47779042 - 47779104
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||  |||||||||||||||||||| ||||||    
T  47779042 agggtaaaattggaatagtagcatttattaggttatttttactatactttttcttacatttga 47779104  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 51562069 - 51562007
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| || ||||||||||||||||| ||||||    
T  51562069 agggtaaaattggaatagtagcatttattaggttgcttatactatactttttcttacatttga 51562007  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 7860962 - 7861024
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| |||||||  | | ||||| ||||||| |||||||||||||||||||| ||||||    
T  7860962 agggtaaaattggaataatagtatttattaggttgcttttactatactttttcttacatttga 7861024  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 14762512 - 14762554
Alignment:
Q  96 atattaagaaagtggattgaccacatttaagttattataaaaa 138  Q
    ||||||||||||||||||||| |||||||||| || |||||||    
T  14762512 atattaagaaagtggattgactacatttaagtcatgataaaaa 14762554  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 265
Target Start/End: Original strand, 32742067 - 32742263
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattt 156  Q
    ||||||||||||| ||||||| |||||||     ||||  ||||||||||||||||||||||||||||||| ||||||||||||  ||       |||||    
T  32742067 tccggtctcaaatgtaagaaaaaaaaaag-----cacacttattaagaaagtggattgaccacatttaagtcattataaaaagtattatttttctaattt 32742161  T
Q  157 tacctttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactata 256  Q
    |||| |||| |||  ||||||||    || ||||||||   ||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  32742162 tacccttgtcttggagtagtaaa----gacattaatga---agtggttttaatgagggtaaacttgaaatagtggcatttaataggttcattttactata 32742254  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 37904760 - 37904557
Alignment:
Q  61 gtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacc 160  Q
    |||| |||| |||||||||||||| |||  || | |||||||||||||||||||||||||||||| | ||||||||| ||||||       | |||||||    
T  37904760 gtcttaaatgtaagaaacaaaaaaaaaaa-cataaatattaagaaagtggattgaccacatttaaatcattataaaa-gtgatattttttcagttttacc 37904663  T
Q  161 tttgttttgttgtagtaaataaagatattaatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatacttt 260  Q
     |||| |||  |||||||     || |||||| | |   || |||||||||||||||||||  ||||||||||||||||| ||| |||||| ||||||||    
T  37904662 cttgtcttggagtagtaat----gacattaataagg---tgagtttaatgagggtaaacttaaaattgtggcatttaataagttcattttattatacttt 37904570  T
Q  261 ttcttatatttga 273  Q
    |||||||||||||    
T  37904569 ttcttatatttga 37904557  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 8740793 - 8740731
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||||||    
T  8740793 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttatatttga 8740731  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 12314245 - 12314320
Alignment:
Q  197 aagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||| ||||||||||||||| ||||||||||| ||||||| | ||| | |||||| |||||||||||| ||||||    
T  12314245 aagtggttttaatgagggtaaatttggaattgtgacatttaaaaagttca-tttactgtactttttcttacatttga 12314320  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 41581542 - 41581599
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||| |||| ||||||||||||||||||||    
T  41581542 tccggtcttgaatgtaagaaacaaaaaaaaaat-cacacatattaagaaagtggattga 41581599  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 43423999 - 43424179
Alignment:
Q  91 cacatatattaagaaa--gtggattgaccacatttaagttattataaaaagtgatannnnnnnaattttacctttgttttgttgtagtaaataaagatat 188  Q
    ||||||||||||||||  ||||| |||||||||| || | ||||||||||||||||       ||||||||| |||| ||   |||||||| |||    |    
T  43423999 cacatatattaagaaaacgtggaatgaccacatt-aattcattataaaaagtgatattttttcaattttaccattgtcttagagtagtaaagaaa----t 43424093  T
Q  189 taatgatgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttgat 274  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||    
T  43424094 taatgatgaagtgggtttaattagggtaaaattggaattgtgtcatttaataggttcattttactatattttttcttacatttgat 43424179  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 52581974 - 52582045
Alignment:
Q  68 atataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaaagt 140  Q
    |||||||||| |||||| ||| ||| |||||||||||||||| |||||||| |||||||| ||||||||||||    
T  52581974 atataagaaagaaaaaaaaaa-gcatatatattaagaaagtgaattgaccatatttaagtcattataaaaagt 52582045  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 41331917 - 41331979
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  41331917 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 41331979  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 51058102 - 51058164
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  51058102 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 51058164  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 41993985 - 41993923
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||  ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  41993985 agggtaacattggaatagtagcatttattaggttgtttttactatactttttcttacatttga 41993923  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 43020707 - 43020769
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||  |||||||||||||||||||| ||||||    
T  43020707 agggtaaaattggaatagtagcatttattaggttacttttactatactttttcttacatttga 43020769  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 36472256 - 36472198
Alignment:
Q  57 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattga 115  Q
    ||||||||  ||| |||||||||||||| |||  |||| ||||||||||||||||||||    
T  36472256 tccggtcttgaatgtaagaaacaaaaaaaaaaatcacacatattaagaaagtggattga 36472198  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 34022286 - 34022225
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||| ||||||| ||  |||||| ||||||  |||||||||||||||||||| ||||||    
T  34022286 gggtaaaattggaatagtaacatttattaggttatttttactatactttttcttacatttga 34022225  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 647882 - 647961
Alignment:
Q  194 atgaagtgggtttaatgagggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  647882 atgaagtggttttaatgagggtaaacatggaatagtggcatttaataggttcattttactatactttttcttatatttga 647961  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 1251933 - 1251995
Alignment:
Q  211 agggtaaacttggaattgtggcatttaataggttgattttactatactttttcttatatttga 273  Q
    |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||    
T  1251933 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttga 1251995  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 647759 - 647833
Alignment:
Q  60 ggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaagtggattgaccacatttaagttattataaaa 137  Q
    |||||||||| |||||||||||||| ||   |||| | ||||| ||||||||||||| |||||||||| |||||||||    
T  647759 ggtctcaaatgtaagaaacaaaaaaaaa---cacacacattaaaaaagtggattgactacatttaagtcattataaaa 647833  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 13853933 - 13853879
Alignment:
Q  212 gggtaaacttggaattgtggcatttaataggttgattttactatactttttctta 266  Q
    ||||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||    
T  13853933 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttctta 13853879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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