View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_14 (Length: 285)
Name: NF20448_low_14
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 32678783 - 32679031
Alignment:
| Q |
16 |
caatagggtttcattatgtaatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32678783 |
caatagggtttcattatgtaatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgt |
32678882 |
T |
|
| Q |
116 |
gagataaataaatgcaataggcaaatgaaaactatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagattgacgaggtacctgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32678883 |
gagataaataaatgcaataggcaaatgaaaactatgcatcagaaactaatttgataaagcagttcaagcccaaaaatgctgagattgacgaggtacctgg |
32678982 |
T |
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| Q |
216 |
atttctgtctatgctcccatttccttgggaaggggtcatttttaggtct |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32678983 |
atttctgtctatgctcccatttccttgggaaggggtaatttttaggtct |
32679031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 1173332 - 1173252
Alignment:
| Q |
119 |
ataaataaatgcaataggcaaatgaaaactatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagat |
200 |
Q |
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| T |
1173332 |
ataaataaatgcattaggcaaatcaaa-ctatacatcagaaaccacttttataaagcaatgcaagcccaacaatgctgagat |
1173252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 48048506 - 48048253
Alignment:
| Q |
16 |
caatagggtttcattatgtaatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgt |
115 |
Q |
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||||||| | ||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
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| T |
48048506 |
caataggatctcattatgtgatctgatcatgactgaagtaaaagaacattcaaaccagaatgttatcaatattgaataccataactctaccgtgacttgt |
48048407 |
T |
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| Q |
116 |
gagataaataaatgcaataggcaaatgaaaactatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagattgacgaggtacctgg |
215 |
Q |
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| ||||||||||| ||| ||||||| || |||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
48048406 |
gtgataaataaattcaactggcaaatcaacactacgcatcagaagccaatttgataaagcaattcaagcccaaaagtgctgagattgatgctgtacctgg |
48048307 |
T |
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| Q |
216 |
atttctgtctatgctcccatttccttgggaaggggtcatttttaggtcttaacc |
269 |
Q |
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||||||||||||||||||| |||||| ||||||||| |||| ||| ||||||| |
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| T |
48048306 |
atttctgtctatgctcccacttccttaggaaggggtaatttctagtacttaacc |
48048253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 47 - 269
Target Start/End: Complemental strand, 48040000 - 48039780
Alignment:
| Q |
47 |
actgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgtgagataaataaatgcaataggcaaatgaaaa |
146 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
48040000 |
actgaagtaaaagaacattcaagccagaatgttatca-tattgaataacatagctctactgagacttgtgagataaataaatgcaataggcaaatgaaaa |
48039902 |
T |
|
| Q |
147 |
ctatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagattgacgaggtacctggatttctgtctatgctcccatttccttgggaa |
246 |
Q |
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|||||||| |||||| |||||||||||||| ||||||||| ||| | |||||||||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
48039901 |
ctatgcataagaaaccaatttgataaagcatttcaagccc-aaagtactgagattgatgatgtacctggatttctgtctatgctcccatttccttggtaa |
48039803 |
T |
|
| Q |
247 |
ggggtcatttttaggtcttaacc |
269 |
Q |
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||||| |||| ||| ||||||| |
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| T |
48039802 |
ggggtaatttctagtacttaacc |
48039780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 48052977 - 48052774
Alignment:
| Q |
34 |
taatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgtgagataaataaatgcaat |
133 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| | ||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||| |
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| T |
48052977 |
taatctgatcatgactgaagcaaaagaacattcaatc-agaatgttatcaacattgaaaaccataattctattgtgacatgtgagataaataaatgcaac |
48052879 |
T |
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| Q |
134 |
aggcaaatgaaaactatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagattgacgaggtacctggatttctgtctatgctccc |
233 |
Q |
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||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| || |
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| T |
48052878 |
aggaaaatcaaaactatgcatcagaaaccaatttgataaagcaattcaagcccaaaaatgctgagattgatgttgtacctggatttctggctatgcttcc |
48052779 |
T |
|
| Q |
234 |
atttc |
238 |
Q |
| |
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||||| |
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| T |
48052778 |
atttc |
48052774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 29813890 - 29814107
Alignment:
| Q |
46 |
gactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgtgagataaataaatgcaataggcaaatgaaa |
145 |
Q |
| |
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|||||||| ||||||||||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| |||| || |
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| T |
29813890 |
gactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaataggaaaat-caa |
29813988 |
T |
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| Q |
146 |
actatgcatcagaaactaatttgataaagcaattcaagcccaaaaatgctgagatt-gacgaggtac--ctggatttctgtctatgctcccatttccttg |
242 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||||||||||||| | | | ||| ||||||||||||||||||||||||| || | |
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| T |
29813989 |
actatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctgg |
29814088 |
T |
|
| Q |
243 |
ggaaggggtcatttttagg |
261 |
Q |
| |
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|| |||||| |||| |||| |
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| T |
29814089 |
ggcaggggtaatttctagg |
29814107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 48054221 - 48054092
Alignment:
| Q |
30 |
tatgtaatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgtgagataaataaatg |
129 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||| |||| |||||| || |||||||||| | | ||| |||||| || ||||| |||||||| |
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| T |
48054221 |
tatgtaatcagatcatgacagaagcaaaagaacattcaaatcagattgttataaacattgaatacc-tagttctgttgtgacttgcgagatgaataaatg |
48054123 |
T |
|
| Q |
130 |
caataggcaaatgaaaactatgcatcagaaac |
161 |
Q |
| |
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|| ||| || || |||||||||||||||||| |
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| T |
48054122 |
cattagacagat-caaactatgcatcagaaac |
48054092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 48050349 - 48050279
Alignment:
| Q |
26 |
tcattatgtaatatgatcacgactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatg |
98 |
Q |
| |
|
|||||||||| | |||| | |||| |||||||| ||||||||| |||||||||||||| ||||||||||||| |
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| T |
48050349 |
tcattatgtattctgatgaggactaaagcaaaa--acattcaaatcagaatgttatcaacattgaataccatg |
48050279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 48034427 - 48034372
Alignment:
| Q |
213 |
tggatttctgtctatgctcccatttccttgggaaggggtcatttttaggtcttaac |
268 |
Q |
| |
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|||||||||| ||||||||||||| ||| |||||||||| |||| |||| |||||| |
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|
| T |
48034427 |
tggatttctgcctatgctcccattccctcgggaaggggtaatttctaggccttaac |
48034372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 32977179 - 32977123
Alignment:
| Q |
213 |
tggatttctgtctatgctcccatttccttgggaaggggtcatttttaggtcttaacc |
269 |
Q |
| |
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|||||||||||||||||||||||| ||| | | |||||| |||| |||| ||||||| |
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|
| T |
32977179 |
tggatttctgtctatgctcccattccctcgagcaggggtaatttctaggccttaacc |
32977123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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