View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20448_low_18 (Length: 247)

Name: NF20448_low_18
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20448_low_18
NF20448_low_18
[»] scaffold0140 (2 HSPs)
scaffold0140 (1-152)||(33326-33478)
scaffold0140 (189-237)||(33239-33287)


Alignment Details
Target: scaffold0140 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 33478 - 33326
Alignment:
Q  1 tccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttg-acataaaatcattttctataagcaaagtctacaagtgcaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  33478 tccttcaatttacacatatttctaaagaaaaaacacaaaagtcataacacggttttttgtatataaaatcattttctataagcaaagtctacaagtgcaa 33379  T
Q  100 atgacaaaggattctaattggtttagccaaaacatgatatatgattttagagc 152  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33378 atgacaaaggagtctaattggtttagccaaaacatgatatatgattttagagc 33326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 33287 - 33239
Alignment:
Q  189 cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33287 cactagttaaggtcgctttgtatcctctctgttctatagctggcctatg 33239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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