View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20448_low_19 (Length: 238)
Name: NF20448_low_19
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_19 |
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| [»] chr6 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34957652 - 34957432
Alignment:
| Q |
18 |
ctaccactgaggagtatactgagttgtatcataatgtattaaaaacagcaaacacgaaagagagtcctagtattcagcaaacatataccattataaatcc |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
34957652 |
ctaccactgagaagtatactgagttgtatcataatgtattaaaagcagcaaacacgaaagagagtcctagtattcagcaagcatatacaattataaatcc |
34957553 |
T |
|
| Q |
118 |
tttaatatgataaagaaagtcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
34957552 |
tttaatatgataaagaaagtcttatacatatctttaagtttaaagactgcataaatcaacaatgagatttaatgaatccaaatctagaaaccaaactaag |
34957453 |
T |
|
| Q |
218 |
ttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34957452 |
ttgcaatctccaaacttcaat |
34957432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 1570034 - 1569985
Alignment:
| Q |
189 |
atgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1570034 |
atgaatccagatctagaaaccaaactaagttgcaatctccaaacttcaat |
1569985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 7656770 - 7656721
Alignment:
| Q |
189 |
atgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7656770 |
atgaatccagatctagaaaccaaactaagttgcaatctccaaacttcaat |
7656721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 7672784 - 7672833
Alignment:
| Q |
189 |
atgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
7672784 |
atgaattcagatctagaaaccaaactaagttgcaatctccaaacatcaat |
7672833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 24026284 - 24026250
Alignment:
| Q |
197 |
agatctagaaaccaaacaaagttgcaatctccaaa |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24026284 |
agatctagaaaccaaactaagttgcaatctccaaa |
24026250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 129706 - 129807
Alignment:
| Q |
137 |
tcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttca |
236 |
Q |
| |
|
||||||||||| ||| ||||| ||||| | || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
129706 |
tcttatacataccttcaagttcaaagatttcagaaatcaacaatgagattcaatgaatccagatctagaaaccaaactaagttgcaatctccaaacttca |
129805 |
T |
|
| Q |
237 |
at |
238 |
Q |
| |
|
|| |
|
|
| T |
129806 |
at |
129807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 34905710 - 34905622
Alignment:
| Q |
149 |
ctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaa |
237 |
Q |
| |
|
||||||||| ||||| | || |||||||| | ||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |
|
|
| T |
34905710 |
ctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctataaaccacactaagctgcaatctccaaacttcaa |
34905622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 11240585 - 11240686
Alignment:
| Q |
137 |
tcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttca |
236 |
Q |
| |
|
||||||||||| ||| ||||| ||||| | || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11240585 |
tcttatacataccttcaagttcaaagatttcagaaatcaacaatgagattcaatgaatccagatctagaaaccaaactaagttgcaatctccaaacttca |
11240684 |
T |
|
| Q |
237 |
at |
238 |
Q |
| |
|
|| |
|
|
| T |
11240685 |
at |
11240686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 22278742 - 22278783
Alignment:
| Q |
197 |
agatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
22278742 |
agatctagaaaccaaactaagttgcaatctccaaactgcaat |
22278783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 44213194 - 44213083
Alignment:
| Q |
127 |
ataaagaaagtcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatct |
226 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | || |||||||| | ||||||||| |||||||||||| ||||||||| ||| |||||| | |
|
|
| T |
44213194 |
ataaagaaagtcttatacatacctttaagtttaaagatttcagaaatcaaccaacagatttaataaatccagatctaaaaaccaaactaagatgcaattt |
44213095 |
T |
|
| Q |
227 |
ccaaacttcaat |
238 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44213094 |
ccaaacttcaat |
44213083 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 15746277 - 15746326
Alignment:
| Q |
189 |
atgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15746277 |
atgaatccagatctagaaaccaaactaagttgcaatctccaaacttcaat |
15746326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 17335619 - 17335585
Alignment:
| Q |
197 |
agatctagaaaccaaacaaagttgcaatctccaaa |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17335619 |
agatctagaaaccaaactaagttgcaatctccaaa |
17335585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 36230289 - 36230386
Alignment:
| Q |
137 |
tcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaactt |
234 |
Q |
| |
|
||||||| ||| ||| ||||||||||| | || |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36230289 |
tcttatatataccttcaagtttaaagatttcagaaatcaacaatgagatttcatgaattcagatctagaaaccaaactaagttgcaatctccaaactt |
36230386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 13737003 - 13736915
Alignment:
| Q |
149 |
ctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaa |
237 |
Q |
| |
|
||||||||| ||||| | || |||||||| | ||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||| |
|
|
| T |
13737003 |
ctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaa |
13736915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 13739070 - 13738982
Alignment:
| Q |
149 |
ctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaa |
237 |
Q |
| |
|
||||||||| ||||| | || |||||||| | ||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||| |
|
|
| T |
13739070 |
ctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaa |
13738982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 11759390 - 11759289
Alignment:
| Q |
137 |
tcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttca |
236 |
Q |
| |
|
||||||||||| ||| ||||| |||| | || |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11759390 |
tcttatacataccttcaagttcgaagatttcagaaatcagcaatgagatttaatgaatccagatctagaaaccaaactaagttgaaatctccaaacttca |
11759291 |
T |
|
| Q |
237 |
at |
238 |
Q |
| |
|
|| |
|
|
| T |
11759290 |
at |
11759289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 43881634 - 43881738
Alignment:
| Q |
133 |
aaagtcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaac |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | || |||||||| | ||||||||| |||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
43881634 |
aaagtcttatacata-ctttaagtttaaagatttcagaaatcaaccaacagatttaataaatccagatctagaaatcaaactgagatgcaatctccaaac |
43881732 |
T |
|
| Q |
233 |
ttcaat |
238 |
Q |
| |
|
|||||| |
|
|
| T |
43881733 |
ttcaat |
43881738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 15572577 - 15572665
Alignment:
| Q |
149 |
ctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaa |
237 |
Q |
| |
|
||||||||| ||||| | || |||||||| | ||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||| |
|
|
| T |
15572577 |
ctttaagttgaaagatttcagaaatcaaccaagagatttaatgaatccagatctatgaaccacactaagctgcaatctccaaacttcaa |
15572665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 18457500 - 18457546
Alignment:
| Q |
188 |
aatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaat |
238 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18457500 |
aatgaatccagatctagaaactaaac----ttgcaatctccaaacttcaat |
18457546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 48735397 - 48735292
Alignment:
| Q |
133 |
aaagtcttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaac |
232 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | ||||||||||| | ||| ||||| |||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
48735397 |
aaagtcttatgcatacctttaagtttaaagatttcataaatcaaccaacagagttaataaatccagatctagaaatcaaactgagatgcaatctccaaac |
48735298 |
T |
|
| Q |
233 |
ttcaat |
238 |
Q |
| |
|
|||||| |
|
|
| T |
48735297 |
ttcaat |
48735292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 7748 - 7648
Alignment:
| Q |
138 |
cttatacatatctttaagtttaaagactacataaatcaacaatgagatttaatgaatccagatctagaaaccaaacaaagttgcaatctccaaacttcaa |
237 |
Q |
| |
|
|||||||||| ||| ||||||||||| | || ||||| || | | || ||||||| |||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
7748 |
cttatacataccttcaagtttaaagatttcagaaatctaccaacatcttcaatgaattcagatctacaaaccaaactaagatgcaatctccaaacttcaa |
7649 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
|
| |
|
|
| T |
7648 |
t |
7648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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