View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20448_low_3 (Length: 565)
Name: NF20448_low_3
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 10 - 547
Target Start/End: Complemental strand, 31139443 - 31138910
Alignment:
| Q |
10 |
gcagagagcaaagaggggagagtacattcatcaaggagcctaacagagattgctgaggaaaggagaaactgagggcgaatatacaagtaacaagttagaa |
109 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31139443 |
gcagagagcagaaaggggagagtacattcatcaaggagcctaacagagattgctgaggaaaggagaaactgagggcgaatataaaagtaacaagttagaa |
31139344 |
T |
|
| Q |
110 |
tgaacgtcatgctgtgaactcataatcttgtttataactggatgtatatgtttctgtatttgagaactgttgtcgccctgtaatagcccttctgttaata |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31139343 |
tgaacgtcatgctgttgactcataatcttgtttataactcgatgtatatgtttctgtatttgagaactgttgtcgccctgtaatagcccttctgttaata |
31139244 |
T |
|
| Q |
210 |
taaatatccagaaattttgattcaataatttctgagacaactcttaagtattgattatgttttagcagttatatttagtcttgttagtagttacatcctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31139243 |
taaatatccagaaattttgattcaataatttctgagacaactcttaagtattgattatgttttagcagttatatttagtcttgttagtagttacatcctt |
31139144 |
T |
|
| Q |
310 |
caatacgttaacttcatctgttcttttgtatgctgtaaaacatggcctaagtccaaatataataaataaataccgcaattagcatttcaaacaccactct |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31139143 |
caatacgttaatttcatctgttcttttgtatgctgtaaaacatggcctaagtccaaatataata----aataccgcaattagcatttcaaacaccactct |
31139048 |
T |
|
| Q |
410 |
tttagcaggttataggtgaagaacatttgtcacatgtttgtatctaattccaaccatgaagtatcataatcataataacataatccctattcaaaatatt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31139047 |
tttagcaggttataggtgaagaacatttgtcacatgtttgtatctaattccaaccatgaagtatcataatcataataacataatccctattcaaaatatt |
31138948 |
T |
|
| Q |
510 |
aaaattcatacaaaccacttttccctctgccatcaatt |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31138947 |
aaaattcatacaaaccacttttccctctgccatcaatt |
31138910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University