View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20448_low_4 (Length: 514)

Name: NF20448_low_4
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20448_low_4
NF20448_low_4
[»] chr5 (12 HSPs)
chr5 (10-498)||(1757575-1758065)
chr5 (354-498)||(29568561-29568707)
chr5 (354-498)||(29569869-29570015)
chr5 (165-256)||(29166703-29166794)
chr5 (345-462)||(27918459-27918573)
chr5 (318-476)||(29166788-29166929)
chr5 (419-473)||(29425182-29425236)
chr5 (316-384)||(29425109-29425176)
chr5 (91-133)||(29568917-29568959)
chr5 (221-262)||(29570123-29570164)
chr5 (16-67)||(29568991-29569042)
chr5 (219-256)||(29568831-29568868)
[»] chr4 (10 HSPs)
chr4 (252-498)||(27481807-27482056)
chr4 (266-498)||(27461673-27461917)
chr4 (355-498)||(18985872-18986017)
chr4 (407-498)||(27521518-27521609)
chr4 (10-133)||(27481547-27481672)
chr4 (10-119)||(27461524-27461635)
chr4 (322-384)||(27521609-27521671)
chr4 (267-325)||(27521694-27521752)
chr4 (151-217)||(27481742-27481808)
chr4 (32-130)||(27521759-27521859)
[»] chr3 (2 HSPs)
chr3 (318-398)||(25518264-25518344)
chr3 (443-498)||(25518343-25518398)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Original strand, 1757575 - 1758065
Alignment:
Q  10 cactgatgtggactgaaggggcaaaaaatgtcatgaccagccagaatccattttggtttgtatcgctcnnnnnnnnttatctaaaacttcttttctttta 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||        |||| |||||||||||||||| ||    
T  1757575 cactgatgtggacagaaggggcaaaaaatgtcatgaccagccagaatccattttgatttgtatctctcaaaacaaattatgtaaaacttcttttcttcta 1757674  T
Q  110 aacattttgattggattttgaggatgcatatatatatagagagagattggtacggtgagaattagttatcgtgggttcgatcctcgacgttcgaagtctt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1757675 aacattttgattggattttgaggatgcatatatatatagagagagattggtacggtgagaattagttatcgtgggttcgatcctcgacgtccgaagtctt 1757774  T
Q  210 taactctacatagagattgatgtgattatgtggttgagcttatatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatatacc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757775 taactctacatagagattgatgtgattatgtggttgagcttatatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatatacc 1757874  T
Q  310 atctcctatatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaac--a 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  1757875 atctcctatatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaa 1757974  T
Q  408 aaagaaaagagttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1757975 aaagaaaacagttcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattcc 1758065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 354 - 498
Target Start/End: Complemental strand, 29568707 - 29568561
Alignment:
Q  354 ctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaa 451  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||  | ||||||| |||| ||||| ||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaaatccaaaaacaaaaaagaaagcaattcagaaaaatgagtgatctacagattcaacaa 29568608  T
Q  452 gaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29568607 gaatccatgttgatccctcacaaacagaaacaatccatgattattcc 29568561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 354 - 498
Target Start/End: Complemental strand, 29570015 - 29569869
Alignment:
Q  354 ctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaa 451  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||  ||||| | |  ||||||| | ||| | ||||||||||||||    
T  29570015 ctttgccactcacactaactttactaccaaagttcaaattcaaatccaaaaacaaaaaagaaaacaatctagaagaacgagtggtctacagattcaacaa 29569916  T
Q  452 gaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  29569915 gaatccattttgatccctcacaaacacaaacaatccatgattattcc 29569869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 29166703 - 29166794
Alignment:
Q  165 tgagaattagttatcgtgggttcgatcctcgacgttcgaagtctttaactctacatagagattgatgtgattatgtggttgagcttatatat 256  Q
    ||||| ||||||||||||||||||||||||||||   ||||||| ||||| || ||||||||||||| |||||||||||||||| |||||||    
T  29166703 tgagagttagttatcgtgggttcgatcctcgacgcctgaagtctctaactttatatagagattgatgggattatgtggttgagcctatatat 29166794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 27918459 - 27918573
Alignment:
Q  345 ttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaagaaaagagttcagaagaatgggtgatttacagat 444  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||  || || ||| | ||||| |||||| ||||| |||||||    
T  27918459 ttcataactctttgccactcagacttactttgcaaccaaagttcaaattcaaatccaaaa--aacag-aaacaattcagcagaatgagtgatctacagat 27918555  T
Q  445 tcaacaagaatccttgtt 462  Q
    ||||||||||||| ||||    
T  27918556 tcaacaagaatccatgtt 27918573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 29166788 - 29166929
Alignment:
Q  318 tatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaagaaaaga 417  Q
    ||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||                 || | ||||||||| |    
T  29166788 tatatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaa-----------------aacaaaaaagaaaaca 29166870  T
Q  418 gttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcacaaac 476  Q
     || ||||||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  29166871 attgagaagaatgagtgatctacagattcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 419 - 473
Target Start/End: Original strand, 29425182 - 29425236
Alignment:
Q  419 ttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcaca 473  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29425182 ttcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 29425109 - 29425176
Alignment:
Q  316 tatatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaa 384  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  29425109 tatatatataatcaaaccttccctcttt-ttcataactctttgccactcacacttactttacaaccaaa 29425176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 29568959 - 29568917
Alignment:
Q  91 taaaacttcttttcttttaaacattttgattggattttgagga 133  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  29568959 taaaatttcttttcttttaaacattttgattggattttgagga 29568917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 29570164 - 29570123
Alignment:
Q  221 agagattgatgtgattatgtggttgagcttatatatcctaca 262  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  29570164 agagattgatgtgattatatggttgagcttatatatcctaca 29570123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 29569042 - 29568991
Alignment:
Q  16 tgtggactgaaggggcaaaaaatgtcatgaccagccagaatccattttggtt 67  Q
    ||||||| |||||||||||||   ||||||||||||||||||||||||||||    
T  29569042 tgtggacagaaggggcaaaaagattcatgaccagccagaatccattttggtt 29568991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 29568868 - 29568831
Alignment:
Q  219 atagagattgatgtgattatgtggttgagcttatatat 256  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29568868 atagagattgatgtgattatttggttgagcttatatat 29568831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 252 - 498
Target Start/End: Original strand, 27481807 - 27482056
Alignment:
Q  252 tatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctc--ctatatatatactcaaaccatccctctttgttcat 349  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||    
T  27481807 tatatcctacctacaaaaatcagttacccttgaaaacctca-caaatcatcatataccatctctcctatatatatactcaaaccatacctcttttttcat 27481905  T
Q  350 aactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaac--aaaagaaaagagttcagaagaatgggtgatttacagattca 447  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||| |||| | |||||||||||||||||||||||||||||    
T  27481906 aactctttgccactcacacttactttacaaccaaagctcaaattcaaatctaaaaacaaaaaacaaaacaattcagaagaatgggtgatttacagattca 27482005  T
Q  448 acaagaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27482006 acaagaatccatgttgatccctcacaaacagaaacaatccatgattattcc 27482056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 266 - 498
Target Start/End: Original strand, 27461673 - 27461917
Alignment:
Q  266 aaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatata----------ctcaaaccatccctctttgttcataactct 355  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||    
T  27461673 aaaaatcaattacccttgaaaacctcaacagatcatcatataccatctcctatatatatatatatatacactcaaaccatccctcttttttcataactct 27461772  T
Q  356 ttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaa--agaaaagagttcagaagaatgggtgatttacagattcaacaaga 453  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||    
T  27461773 ttgccactcacacttactttacaatcaaagttcaaattcaaatctaaaaacaaaagagaaaacaattcagaagaatgggtgatttacagattcaacaaga 27461872  T
Q  454 atccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  27461873 atccatgttgatccctcacaaacagaaacaatccatgattattcc 27461917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 498
Target Start/End: Original strand, 18985872 - 18986017
Alignment:
Q  355 tttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaag 452  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| | ||||||||||||||||||||||| ||||||||||    
T  18985872 tttgccactcacacttactttacgaccaaagttcaaattcaaatctaaaaagaaaaaagaaaacaattcagaagaatgggtgatttacaaattcaacaag 18985971  T
Q  453 aatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    ||||| || |||||||||||||||||||||||||||||||||||||    
T  18985972 aatccatggtgatccctcacaaacagaaacaatccatgattattcc 18986017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 27521609 - 27521518
Alignment:
Q  407 aaaagaaaagagttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27521609 aaaagaaaacaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattcc 27521518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 27481547 - 27481672
Alignment:
Q  10 cactgatgtggactgaaggggcaaaaaatgtcatgaccagccag-aatccattttggtttgtatcgctc-nnnnnnnnttatctaaaacttcttttcttt 107  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||         |||| |||||||||||||| ||    
T  27481547 cactgatgtggacagaaggggcaaaaattgtcatgaccagccagaaatccattttggtttgtatctctcaaatacaaattatgtaaaacttcttttcctt 27481646  T
Q  108 taaacattttgattggattttgagga 133  Q
    |||||||||||||| |||||| ||||    
T  27481647 taaacattttgattagattttaagga 27481672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 27461524 - 27461635
Alignment:
Q  10 cactgatgtggactgaaggggcaaaaaatgtcatgaccagccag-aatccattttggtttgtatcgctc-nnnnnnnnttatctaaaacttcttttcttt 107  Q
    |||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||         |||| |||||||||||||||||    
T  27461524 cactgatgaggacagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtttgtatctctcaaatacaaattatgtaaaacttcttttcttt 27461623  T
Q  108 taaacattttga 119  Q
    ||||||||||||    
T  27461624 taaacattttga 27461635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 27521671 - 27521609
Alignment:
Q  322 tatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaa 384  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaa 27521609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 27521752 - 27521694
Alignment:
Q  267 aaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatata 325  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27521752 aaaatcagttacccttgaaaacctcaacagatcatcatataccatctcctatatatata 27521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 27481742 - 27481808
Alignment:
Q  151 agagattggtacggtgagaattagttatcgtgggttcgatcctcgacgttcgaagtctttaactcta 217  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||| ||||||||    
T  27481742 agagattggtacagtgagaattagttatcatgggttcgatcctcggcgctcgaagtctctaactcta 27481808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 27521859 - 27521759
Alignment:
Q  32 aaaaaatgtcatgaccagccag-aatccattttggtttgtatcgctc-nnnnnnnnttatctaaaacttcttttcttttaaacattttgattggattttg 129  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||         |||| |||||||| |||||||||||||||||||||| |||||||    
T  27521859 aaaaaatgtcatgaccagccagaaatccattttggtttgtatctctcaaatacaaattatgtaaaacttattttcttttaaacattttgatttgattttg 27521760  T
Q  130 a 130  Q
    |    
T  27521759 a 27521759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 25518264 - 25518344
Alignment:
Q  318 tatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaat 398  Q
    |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  25518264 tatatatactcaaaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaat 25518344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 25518343 - 25518398
Alignment:
Q  443 attcaacaagaatccttgttgatccctcacaaacagaaacaatccatgattattcc 498  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25518343 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattcc 25518398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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