View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_6 (Length: 501)
Name: NF20448_low_6
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 2708898 - 2708671
Alignment:
| Q |
258 |
ctgatgcaaaaatggggtgtatcattaaggaaaaactgggaccggtgtgctgcttaagttcccctagtaacttgtaacgacgttttacatgtctttcatc |
357 |
Q |
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| T |
2708898 |
ctgatgcaaaactggggtgtatcattaaggaaaaactgggaccggtgtgctacttaagttcccctagtaacttgtaacgacgttttacatgtctttcatc |
2708799 |
T |
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| Q |
358 |
aaatagctaactttgttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaac |
457 |
Q |
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| T |
2708798 |
aaatagctaactttgttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaac |
2708699 |
T |
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| Q |
458 |
ttgtaactgatcttgccgttcaagatat |
485 |
Q |
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| T |
2708698 |
ttgtaactgatctcgccgttcaagatat |
2708671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 2709547 - 2709441
Alignment:
| Q |
11 |
aagaatatacaatcaaacttcaaaactcttttgttagaagtcggaggtttaggagttgacatgctaaaggatttattagcacctgttaccatataataag |
110 |
Q |
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| T |
2709547 |
aagaaaatacaatcaaacttctaaactcttttgttagaagtcggaggtttaggagttgacatgctaaaggatttattagcacctgataccatataataag |
2709448 |
T |
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| Q |
111 |
gtcgata |
117 |
Q |
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| T |
2709447 |
gtcgata |
2709441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 2709367 - 2709302
Alignment:
| Q |
189 |
gttggaaaagtgataagatgcttgtattatttgaaactccagcaggttttgcccttttcaaattgtt |
255 |
Q |
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| T |
2709367 |
gttggaaaagtgataagatgct-gtattatttgaaactccagcaggttttgcccttttcaaattgtt |
2709302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 2702835 - 2702759
Alignment:
| Q |
382 |
ttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaact |
458 |
Q |
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| T |
2702835 |
ttgcagaaaatcgactgtgttcacagcaatgctgttatggagataatgcgaggtattcgatatcagttgacggaact |
2702759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 39833009 - 39833075
Alignment:
| Q |
189 |
gttggaaaagtgataagatgcttgtattatttgaaactccagcaggttttgcccttttcaaattgtt |
255 |
Q |
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| T |
39833009 |
gttggaaaagtgataagatgcttgtattatttgaaacaccagcaggttttgcccttttcaaattgtt |
39833075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 20143784 - 20143836
Alignment:
| Q |
20 |
caatcaaacttcaaaactcttttgttagaagtcggaggtttaggagttgacat |
72 |
Q |
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| T |
20143784 |
caatcaaacttggaaactcttttgttagaagctggtggtttgggagttgacat |
20143836 |
T |
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