View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_7 (Length: 417)
Name: NF20448_low_7
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42037155 - 42037270
Alignment:
| Q |
1 |
agaagagagataaatagagtaacatactcgctctcatgcaaaatttcaaccaataaaaaagaatgtattaaaaaacctgttagaaagtgtgttactaagc |
100 |
Q |
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| T |
42037155 |
agaagagagataaatagagtgacatactcgctctcatgcaaaatttcaaccaataaaaaagaatgtattaaaaaacgtgttagaaagtgtgttactaagc |
42037254 |
T |
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| Q |
101 |
cattatattcttacgg |
116 |
Q |
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|||||||||||||||| |
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| T |
42037255 |
cattatattcttacgg |
42037270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 42037456 - 42037557
Alignment:
| Q |
297 |
taattaagaaccctaacctcaattgcacagagaaagaaaatgcttggttcaccaataactattagcactctatttaattttagtgtttgtatgtgtgcct |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037456 |
taattaagaaccctaacctcaattgcacagagaaagaaaatacttggttcaccaataactattagcactctatttaattttagtgtttgtatgtgtgcct |
42037555 |
T |
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| Q |
397 |
gt |
398 |
Q |
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|| |
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| T |
42037556 |
gt |
42037557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 42037344 - 42037386
Alignment:
| Q |
190 |
tagtgtttaatcattgtaaaagtgaataaacaaagagggaaac |
232 |
Q |
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| T |
42037344 |
tagtgtttaatcattgtaaaagtgaataaacaaagagggaaac |
42037386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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