View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20448_low_8 (Length: 373)
Name: NF20448_low_8
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_8 |
 | |
|
| [»] scaffold0063 (2 HSPs) |
| | |
|
| [»] scaffold0002 (6 HSPs) |
| | |
|
| [»] scaffold0263 (3 HSPs) |
| | |
|
| [»] scaffold0351 (4 HSPs) |
| | |
|
| [»] scaffold1364 (1 HSPs) |
| | |
|
| [»] scaffold1266 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0063 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 36332 - 35976
Alignment:
| Q |
1 |
atttttattccttagccttttttgtactacttgtgctgaaaagactaagatatttgattaatatatttcattttagcttcttaaaacatcaaataatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36332 |
atttttattccttagccttttttgtactatttgtgctgaaaagactaagatatttgattaatatatttcattttaccttcttaaaacatcaaataatcaa |
36233 |
T |
|
| Q |
101 |
taattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctccccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36232 |
taattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttgagtcaatgcttgatgatgatctcaggtctccccat |
36133 |
T |
|
| Q |
201 |
tcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggactatagtgatggatatacacattgaataatatatctttcaaagggctgaa |
300 |
Q |
| |
|
| ||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36132 |
ttaca--gtatgg------gcatatgtgaaaatgcattttcatacaaggactatagtgatggatatacacattgaataatatagctttcaaagggctgaa |
36041 |
T |
|
| Q |
301 |
caattttctctcaaaataaaagggtagaaaaattattgcatctgatccaacctatcttatcctatg |
366 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36040 |
caattttctctcaaaa-aaaagggtagaaaaattattgcatctgatccaacctatcttatcctatg |
35976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 50872 - 50829
Alignment:
| Q |
147 |
agtgcaagccgtgtgtttaagttaatgcttgatgatgatctcag |
190 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
50872 |
agtgcaagccgtatgtttgagttaatgcttgatgatgatctcag |
50829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 111272 - 111017
Alignment:
| Q |
34 |
tgctgaaaagactaagatatttgattaatatatttcattttagcttcttaaaacatcaaataatcaataattactaacaataatcgaggataacagtagc |
133 |
Q |
| |
|
|||| |||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
111272 |
tgcttaaaagactaaaatgtttgattaaaatatttcattttagcttcttaaaacatcaaacaatcaataattactaacaataattgaggataatagtagc |
111173 |
T |
|
| Q |
134 |
atctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctccccattcacactatatgggaaaatgtagatgtgaaaat |
233 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
111172 |
ctctttcacctgcagtgcaagctgtgtgtttgagtcaatgcttgatgatgatctcaggtccccccattcacac--tatgggaaaatgcagatgtgaaaat |
111075 |
T |
|
| Q |
234 |
gcattttcatacaaggactatagtgatggatatacacattgaataatatatctttcaa |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||| |
|
|
| T |
111074 |
gcattttcatacaaggactatagtggtgtatatacgcattgaataatatagctttcaa |
111017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 113799 - 113645
Alignment:
| Q |
96 |
atcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctc |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
113799 |
atcaataattactaacaataattgaggataatagtagcatctttctccaacagtgcaagccgtatgtttgagtcaatgcttgatgatgatctcatgtctt |
113700 |
T |
|
| Q |
196 |
cccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113699 |
ctcgttcccactat-tgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
113645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 96722 - 96872
Alignment:
| Q |
96 |
atcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctc |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||||| | ||||| ||||| ||||| |||||||| || ||||||| |||||||| |
|
|
| T |
96722 |
atcaataattactaacaataattgaggataatagtagcatccttctccaacggtgcatgccgtatgtttgagttaatgtttaatgatga---caggtctc |
96818 |
T |
|
| Q |
196 |
cccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
||| ||||||| |||| |||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
96819 |
cccgttcacac--tatgagaaaatatagatgtgaaaatgcacttccatacaaggac |
96872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 111018 - 110972
Alignment:
| Q |
320 |
aagggtagaaaaattattgcatctgatccaacctatcttatcctatg |
366 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
111018 |
aagggtagaaaaattgttgcatctgatccaacctatcttatcctatg |
110972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 453048 - 453088
Alignment:
| Q |
319 |
aaagggtagaaaaattattgcatctgatccaacctatctta |
359 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
453048 |
aaagggtagaaaaactattgcatctaatccaacctatctta |
453088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 453021 - 453053
Alignment:
| Q |
263 |
atatacacattgaataatatatctttcaaaggg |
295 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
453021 |
atatacacattgaataatatagctttcaaaggg |
453053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 21864 - 21566
Alignment:
| Q |
1 |
atttttattccttagcctttttt--gtactacttgtgctgaaaagactaagatatttgattaatatat--ttcattttagcttcttaaaacatcaaataa |
96 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
21864 |
atttttattccttaacttttttttggtactacttgtgctgaaaagactaagatgtttgattaatatatatttcattttaacttcttaaaacatcaaacaa |
21765 |
T |
|
| Q |
97 |
tcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctcc |
196 |
Q |
| |
|
| ||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| | || | |||||| | |
|
|
| T |
21764 |
ttaataattactaacaataattgacgataatagtagcatctttctcctgccgtgcaagccgtgtgtttgagtcaatgcttgatgctaattttaggtct-c |
21666 |
T |
|
| Q |
197 |
ccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggactata---gtgatggatatacacattgaataatatatctttcaaag |
293 |
Q |
| |
|
||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
21665 |
ccatttacac--tatgggaaaattcagatgtaaaaatgcattttcatacaaggactatagtggtgatatacatacacattgaataatatagctttcaaag |
21568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 17720 - 17869
Alignment:
| Q |
96 |
atcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctc |
195 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||| |||| || ||||| ||||| | | ||||||||||||||| ||||||| |
|
|
| T |
17720 |
atcaataattactaacaataattaaggataatagtagcatctttctccaacagtacacgccgtatgtttgaatcaatgcttgatgatga---caggtct- |
17815 |
T |
|
| Q |
196 |
cccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17816 |
cccgttcacac--tacgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
17869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 21571 - 21531
Alignment:
| Q |
319 |
aaagggtagaaaaattattgcatctgatccaacctatctta |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21571 |
aaagggtagaaaaattattgcatctgatccaacctatctta |
21531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 34 - 295
Target Start/End: Original strand, 10309 - 10576
Alignment:
| Q |
34 |
tgctgaaaagactaagatatttgattaatatatttcattttagcttcttaaaacatcaaataatcaataattactaacaataatcgaggataacagtagc |
133 |
Q |
| |
|
|||| |||| ||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10309 |
tgcttaaaaaactaaaatgtttgattaaaatatttcattttagcttcttaaaacatcaaacaatcaataattactaacaataattgaggataatagtagc |
10408 |
T |
|
| Q |
134 |
atctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctccccattcacactatatgggaaaatgtagatgtgaaaat |
233 |
Q |
| |
|
|| |||| |||||||||||||| |||||||| ||| ||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
10409 |
atgtttcacctgcagtgcaagctgtgtgtttgagtcaatgcttgatgataatctcaggtcaccccattcacac--tatgggaaaatgcagatgtgaaaat |
10506 |
T |
|
| Q |
234 |
gcattttcatacaaggactatagtg--------atggatatacacattgaataatatatctttcaaaggg |
295 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10507 |
gcattttcatacaaggactatattggtgtatatatatatatacacattgaataatatagctttcaaaggg |
10576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 7834 - 7987
Alignment:
| Q |
96 |
atcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctc |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
7834 |
atcaataattactaacaataattgaggataatagtagcatctttctccaacagtgcaag-cgtatgtttgagtcaatgcttgatgatgatctcatgtctt |
7932 |
T |
|
| Q |
196 |
cccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7933 |
ctcgttcccactat-tgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
7987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 17980 - 18133
Alignment:
| Q |
96 |
atcaataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgc-ttgatgatgatctcaggtct |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| || ||||| ||| ||||| ||| ||||| |||||||||||||||| ||| |
|
|
| T |
17980 |
atcaataattactaacaataattgaggataatagtagcatctttctccaatagagcaagtcgtatgtttgagt-aatgccttgatgatgatctcagttct |
18078 |
T |
|
| Q |
195 |
ccccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18079 |
tcccgttcccactat--gggaaaatgtagatgtgaaaatgcattttcatacaaggac |
18133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 10571 - 10618
Alignment:
| Q |
319 |
aaagggtagaaaaattattgcatctgatccaacctatcttatcctatg |
366 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
10571 |
aaagggtagaaaaattgttgcatttgatccaacctatcttatcctatg |
10618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 6293623 - 6293458
Alignment:
| Q |
99 |
aataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctc-aggtctccc |
197 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||| ||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| | ||||||| |
|
|
| T |
6293623 |
aataattactaacaataatttaggataataatagcatttttctccaacagtgcaagccttgtgtttgagtcaatgcttgatgatgatctccaagtctccc |
6293524 |
T |
|
| Q |
198 |
cattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggactatagtgatggata |
265 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6293523 |
cattcataccat--gggaaaatgtagatgtgaaaatgcattttcatacaaggactatagtggtggata |
6293458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 295
Target Start/End: Complemental strand, 6279176 - 6278996
Alignment:
| Q |
99 |
aataattactaacaataatcgaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatct-caggtctccc |
197 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||| |||||||| ||| |||||| |||||||||| |||||||||| |
|
|
| T |
6279176 |
aataattactaacaataattgag-ataatagtagcatctttctccaacagtgcaagctgtgtgtttgagtcgatgcttcatgatgatctccaggtctccc |
6279078 |
T |
|
| Q |
198 |
cattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggactatagtgatggatatacacattgaataatatatctttcaaaggg |
295 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
6279077 |
cattcacact----------------atgggaaaatgcatttccatacaaggactatagtggtggatatacacattgaataatatagcttttaaaggg |
6278996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 30542142 - 30542191
Alignment:
| Q |
30 |
cttgtgctgaaaagactaagatatttgattaatatatttcattttagctt |
79 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
30542142 |
cttgtgctccaaagactaagatgtttgattaatatgtttcattttagctt |
30542191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 42689573 - 42689605
Alignment:
| Q |
53 |
tttgattaatatatttcattttagcttcttaaa |
85 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
42689573 |
tttgattaatatatttcattttagtttcttaaa |
42689605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1364 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 1802 - 1726
Alignment:
| Q |
173 |
gcttgatgatgatctcaggtctccccattcacactatatgggaaaatgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1802 |
gcttgatgctgatctcaggtctccgcgttcacactat--gggaaaatgtagatgtgaaaatgcattttcatacaaggac |
1726 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1266 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1266
Description:
Target: scaffold1266; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 2235 - 2108
Alignment:
| Q |
119 |
gaggataacagtagcatctttctcctgcagtgcaagccgtgtgtttaagttaatgcttgatgatgatctcaggtctccccattcacactatatgggaaaa |
218 |
Q |
| |
|
|||||||| ||||||||| |||||| | |||| ||||| ||||| |||||||| || ||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
2235 |
gaggataagagtagcatccttctccaacgatgcatgccgtatgtttgagttaatgtttaatgatga---caggtctccccattcacactat--gagaaaa |
2141 |
T |
|
| Q |
219 |
tgtagatgtgaaaatgcattttcatacaaggac |
251 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| |
|
|
| T |
2140 |
tatagatgtgaaaatgcatttccatacaaggac |
2108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 41125944 - 41125915
Alignment:
| Q |
57 |
attaatatatttcattttagcttcttaaaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41125944 |
attaatatatttcattttagcttcttaaaa |
41125915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 7433595 - 7433562
Alignment:
| Q |
53 |
tttgattaatatatttcattttagcttcttaaaa |
86 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
7433595 |
tttggttaatatatttcattttagcttcttaaaa |
7433562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 6216353 - 6216381
Alignment:
| Q |
58 |
ttaatatatttcattttagcttcttaaaa |
86 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6216353 |
ttaatatatttcattttagcttcttaaaa |
6216381 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 9348925 - 9348881
Alignment:
| Q |
31 |
ttgtgctgaaaagactaagatatttgattaatatatttcatttta |
75 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
9348925 |
ttgtgctagaaagactaagatagttggttaatatatttcatttta |
9348881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 36274693 - 36274665
Alignment:
| Q |
54 |
ttgattaatatatttcattttagcttctt |
82 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36274693 |
ttgattaatatatttcattttagcttctt |
36274665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 29691342 - 29691370
Alignment:
| Q |
58 |
ttaatatatttcattttagcttcttaaaa |
86 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29691342 |
ttaatatatttcattttagcttcttaaaa |
29691370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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