View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20448_low_9 (Length: 331)
Name: NF20448_low_9
Description: NF20448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20448_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 1757201 - 1757522
Alignment:
| Q |
10 |
caagaaaatagaaagttaaatgtaactatcatgatttaatgatcatcaatgaaaaatatattgcaaatttcctttttgcagagaagaacagaattattag |
109 |
Q |
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| T |
1757201 |
caagaaaatagaaagttaaatgtaactatcatgatttaatgatcatcaatgaaaaatatattgcaaatttcctttttgcagagaagaacagaattattgg |
1757300 |
T |
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| Q |
110 |
atgagtaagtagataaataaagcaaattatttataagtttaaatattaggatttgaaataattgttaagcttgtaagttgataaaaatctaggtctgtaa |
209 |
Q |
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| T |
1757301 |
atgagtaagtagataaataaagcaaattatttataagtttaaatattaggatttgaaataattgttaagcttgtaagttgagaaaaatctaggtctgtaa |
1757400 |
T |
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| Q |
210 |
aatttagggtgtatatcattaaaaataaatgactgatatctcnnnnnnnatagacttatttccaagtcataactaataaaatgtgaaactcnnnnnnnaa |
309 |
Q |
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| T |
1757401 |
aattcagggtgtatatcattaaaaataaatgactgatatctctttttttatagacttatttccaagtcataactaataaaatgtgaaactctttttttaa |
1757500 |
T |
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| Q |
310 |
taaaatgactgttttgtatgaa |
331 |
Q |
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| T |
1757501 |
taaaatgactgttttgtatgaa |
1757522 |
T |
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