View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20449_high_1 (Length: 418)
Name: NF20449_high_1
Description: NF20449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20449_high_1 |
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| [»] scaffold0372 (2 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1987 - 2273
Alignment:
| Q |
1 |
tttttgttacatagatgaccgatttgacctgtttggttttgtcgtttaatattgttatgggtcattattttgtcgtcaacgtcattgtgttatgtccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1987 |
tttttgttacatagatgaccgatttgacctgtttggttttgtcgtttaatattgttatgggtcattattttgtcgtcaacgtcattgtgttatgtccttt |
2086 |
T |
|
| Q |
101 |
attttggtttgttttatcttgactaggtagtattttgcttcctcgtcctattgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaactt |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2087 |
attttggtttgttttattttgactaggtagtattttgcttcctcgtcctattgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaactt |
2186 |
T |
|
| Q |
201 |
cnnnnnnnnnngcttattctttcataattaatttcatgatttagtttataatgtctagctcatataacaatgtcaataacgatattg |
287 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187 |
tttttttttttgcttatactttcataattaatttcatgatttagtttataatgtctagctcatataacaatgtcaataacgatattg |
2273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 2381 - 2497
Alignment:
| Q |
284 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatgtcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttggta |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2381 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatatcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttgtta |
2480 |
T |
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| Q |
384 |
cattcctagcaatctta |
400 |
Q |
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||||||||||||||||| |
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| T |
2481 |
cattcctagcaatctta |
2497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 21449550 - 21449263
Alignment:
| Q |
1 |
tttttgttacatagatgaccgatttgacctgtttggttttgtcgtttaatattgttatgggtcattattttgtcgtcaacgtcattgtgttatgtccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449550 |
tttttgttacatagatgaccgatttgacctgtttggttttgtcgtttaatattgttatgggtcattattttgtcgtcaacgtcattgtgttatgtccttt |
21449451 |
T |
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| Q |
101 |
attttggtttgttttatcttgactaggtagtattttgcttcctcgtcctattgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaac-t |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21449450 |
attttggtttgttttattttgactaggtagtattttgcttcctcgtcctattgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaactt |
21449351 |
T |
|
| Q |
200 |
tcnnnnnnnnnngcttattctttcataattaatttcatgatttagtttataatgtctagctcatataacaatgtcaataacgatattg |
287 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449350 |
ttttttttttttgcttatactttcataattaatttcatgatttagtttataatgtctagctcatataacaatgtcaataacgatattg |
21449263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 21449155 - 21449039
Alignment:
| Q |
284 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatgtcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttggta |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21449155 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatatcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttgtta |
21449056 |
T |
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| Q |
384 |
cattcctagcaatctta |
400 |
Q |
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||||||||||||||||| |
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| T |
21449055 |
cattcctagcaatctta |
21449039 |
T |
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