View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20449_high_5 (Length: 214)

Name: NF20449_high_5
Description: NF20449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20449_high_5
NF20449_high_5
[»] chr6 (5 HSPs)
chr6 (1-196)||(21944943-21945138)
chr6 (132-196)||(20115076-20115143)
chr6 (1-40)||(7596071-7596110)
chr6 (1-37)||(3401444-3401480)
chr6 (2-46)||(14600458-14600502)
[»] chr7 (14 HSPs)
chr7 (1-57)||(11818401-11818457)
chr7 (1-56)||(23824716-23824771)
chr7 (1-58)||(27689105-27689162)
chr7 (2-46)||(17833127-17833171)
chr7 (2-57)||(40353646-40353701)
chr7 (2-57)||(45042188-45042243)
chr7 (4-53)||(14054091-14054140)
chr7 (4-53)||(14364119-14364168)
chr7 (2-58)||(27131328-27131385)
chr7 (1-57)||(7170872-7170928)
chr7 (2-46)||(9417626-9417670)
chr7 (1-57)||(17288590-17288646)
chr7 (1-57)||(39004105-39004161)
chr7 (1-37)||(46342948-46342984)
[»] chr4 (8 HSPs)
chr4 (5-59)||(5191222-5191276)
chr4 (122-182)||(5812172-5812232)
chr4 (1-44)||(6328371-6328414)
chr4 (2-45)||(44570957-44571000)
chr4 (2-44)||(22320743-22320785)
chr4 (7-45)||(52397716-52397754)
chr4 (1-37)||(6284194-6284230)
chr4 (1-37)||(11116400-11116436)
[»] chr2 (13 HSPs)
chr2 (1-58)||(37742854-37742911)
chr2 (1-58)||(13196572-13196629)
chr2 (1-57)||(38993698-38993754)
chr2 (2-45)||(1684159-1684202)
chr2 (2-45)||(39958185-39958228)
chr2 (2-37)||(44987929-44987964)
chr2 (1-55)||(27003298-27003351)
chr2 (1-46)||(2048021-2048066)
chr2 (1-58)||(11134980-11135037)
chr2 (4-45)||(16268204-16268245)
chr2 (5-46)||(44652221-44652262)
chr2 (2-58)||(8495492-8495548)
chr2 (1-37)||(45383383-45383419)
[»] chr8 (12 HSPs)
chr8 (2-46)||(16736456-16736500)
chr8 (4-58)||(14294885-14294936)
chr8 (2-44)||(5062149-5062191)
chr8 (122-182)||(32629055-32629115)
chr8 (2-45)||(5733172-5733215)
chr8 (2-45)||(28849170-28849213)
chr8 (122-177)||(32710114-32710169)
chr8 (4-58)||(468458-468512)
chr8 (3-37)||(16864150-16864184)
chr8 (4-57)||(36466773-36466826)
chr8 (2-46)||(14584636-14584680)
chr8 (2-46)||(40325346-40325390)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-56)||(24119-24174)
[»] chr3 (6 HSPs)
chr3 (122-179)||(27737621-27737678)
chr3 (2-45)||(7673931-7673974)
chr3 (1-44)||(19556835-19556878)
chr3 (2-36)||(49615510-49615544)
chr3 (1-37)||(39144439-39144475)
chr3 (2-46)||(39290736-39290780)
[»] chr1 (7 HSPs)
chr1 (4-57)||(487674-487727)
chr1 (2-45)||(6540488-6540531)
chr1 (7-73)||(44464338-44464404)
chr1 (1-29)||(15240802-15240830)
chr1 (1-57)||(17633800-17633856)
chr1 (1-57)||(46288146-46288202)
chr1 (1-57)||(48070308-48070364)
[»] scaffold0189 (1 HSPs)
scaffold0189 (2-45)||(13522-13565)
[»] scaffold0074 (1 HSPs)
scaffold0074 (2-57)||(17672-17727)
[»] chr5 (3 HSPs)
chr5 (1-43)||(39612947-39612989)
chr5 (4-37)||(31196086-31196119)
chr5 (1-57)||(7196825-7196881)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-46)||(8650-8694)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21944943 - 21945138
Alignment:
Q  1 tacaaaattaattacatttttt--agtacgtgtgaaatgatcaaaacaacttataatttactgcggagaaagtataagagaaaagagtgtattgatcaca 98  Q
    ||||||||||||||| ||||||  | |||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||  ||||||||||    
T  21944943 tacaaaattaattactttttttttaatacgtgtgaaatgaccaaaacaacttataatttagggcggagaaagtataagacaaaagagt--attgatcaca 21945040  T
Q  99 atcccttatatataaagacacaaacctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgtagtatgtgtgctagatcc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21945041 atcccttatatataaagacacaaacctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgtagtatgtgtgctagatcc 21945138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 20115143 - 20115076
Alignment:
Q  132 aggagttgtttgcatagcttgcttcatcgacg---cctccattcatgtgtagtatgtgtgctagatcc 196  Q
    ||||||| ||||||||||||| ||| ||||||   |||||||||||||| ||||||||||||||||||    
T  20115143 aggagttttttgcatagcttgtttcttcgacgtcacctccattcatgtgcagtatgtgtgctagatcc 20115076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7596071 - 7596110
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatc 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7596071 tacaaaattaattacattttttaatacgtgtgaaatgatc 7596110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3401480 - 3401444
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  3401480 tacaaaattaattacattttttaatacgtatgaaatg 3401444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14600502 - 14600458
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  14600502 acaatattaattacatttcttaatacgtgtgaaatgaccaaaaca 14600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11818401 - 11818457
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||    
T  11818401 tacaaaatcagttacatttcttagtacgtgtgaaatgatctaaacaacttataattt 11818457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23824716 - 23824771
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataatt 56  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||    
T  23824716 tacaaaattaattacattttttaatacgtgtgaaatgttcaaaacatcgtataatt 23824771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27689162 - 27689105
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||||||||||||| |||| ||| ||||||||||||| |||||||  |||||||||||    
T  27689162 tacaaaattaattatatttcttaatacgtgtgaaatgctcaaaacgtcttataattta 27689105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 17833127 - 17833171
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  17833127 acaaaattaattacatttcttaatacgtgtgaaatggtcaaaaca 17833171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 40353701 - 40353646
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||| ||||||||||||| ||| ||||||||||||| |||||||  ||||||||||    
T  40353701 acaatattaattacatttcttaatacgtgtgaaatggtcaaaacgtcttataattt 40353646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 45042188 - 45042243
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||||||||||||| ||| ||||||| ||||| |||||||| | ||||||||    
T  45042188 acaaaattaattacatttcttaatacgtgtaaaatgttcaaaacatcatataattt 45042243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 14054140 - 14054091
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttata 53  Q
    ||||||| |||||||| ||| |||||||||||||| |||||| |||||||    
T  14054140 aaaattagttacatttcttaatacgtgtgaaatgagcaaaacgacttata 14054091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 14364168 - 14364119
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttata 53  Q
    ||||||| |||||||| ||| |||||||||||||| |||||| |||||||    
T  14364168 aaaattagttacatttcttaatacgtgtgaaatgagcaaaacgacttata 14364119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 27131385 - 27131328
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaat-gatcaaaacaacttataattta 58  Q
    ||||||||||||| |||| ||| |||||||||||| | | ||||||||||||||||||    
T  27131385 acaaaattaattatatttcttaatacgtgtgaaatagctaaaaacaacttataattta 27131328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7170872 - 7170928
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||||||||| |||||||| |||| ||||||| | |||| | |||||||||||    
T  7170872 tacaaaattaattatattttttaatacgcgtgaaataaccaaagcgacttataattt 7170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9417670 - 9417626
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||||||||||||||||| ||| |||||||||||||  |||||||    
T  9417670 acaaaattaattacatttcttaatacgtgtgaaatgcccaaaaca 9417626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17288646 - 17288590
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||||||||||||||||| ||| ||  ||| ||||| |||||||||||| ||||||    
T  17288646 tacaaaattaattacatttcttaatatttgtaaaatggtcaaaacaacttttaattt 17288590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39004105 - 39004161
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||||||||||||||  || |||  ||||||||| |||||| |||||||||||    
T  39004105 tacaaaattaattacatttcataatacacgtgaaatgaccaaaacgacttataattt 39004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46342948 - 46342984
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  46342948 tacaaaattaattacatttcttaatacgtgtgaaatg 46342984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 5191276 - 5191222
Alignment:
Q  5 aaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataatttac 59  Q
    ||||||||| || |||||| |||||||||||||| ||||||||||||||||||||    
T  5191276 aaattaatttcaatttttaatacgtgtgaaatgaccaaaacaacttataatttac 5191222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 5812172 - 5812232
Alignment:
Q  122 acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgtagta 182  Q
    ||||||||  ||||||||||||||||||||||||| || || | |||||||||| ||||||    
T  5812172 acctgaagcaaggagttgtttgcatagcttgcttcttcaacacttccattcatgggtagta 5812232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6328371 - 6328414
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaa 44  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  6328371 tacaaaattaattacattttttaatacgtgtgaaaggaccaaaa 6328414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 44570957 - 44571000
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  44570957 acaatattaattacatttcttaatacgtgtgaaatgatcaaaac 44571000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 22320743 - 22320785
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaa 44  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||    
T  22320743 acaatattaattacattttttaatacgtgtgaaatggtcaaaa 22320785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 52397754 - 52397716
Alignment:
Q  7 attaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  52397754 attaattacattttttaatacgtgtgaaatgaccaaaac 52397716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6284194 - 6284230
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  6284194 tacaaaattaattacatttcttaatacgtgtgaaatg 6284230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11116436 - 11116400
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||||||||||| | |||||||||||||    
T  11116436 tacaaaattaattacatttttgaatacgtgtgaaatg 11116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37742854 - 37742911
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||||||||||||||||||| || || |||||||||||||||||  ||||||||||||    
T  37742854 tacaaaattaattacattttctaatatgtgtgaaatgatcaaaatgacttataattta 37742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13196572 - 13196629
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||||||||||||||||||| || ||||||||||||| |||||||  | |||||||||    
T  13196572 tacaaaattaattacattttataatacgtgtgaaatgctcaaaacgtcatataattta 13196629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38993698 - 38993754
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||| ||||||||||||| ||| |||||||||||||| ||||||| |||| |||||    
T  38993698 tacaatattaattacatttcttaatacgtgtgaaatgaccaaaacatcttacaattt 38993754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 1684202 - 1684159
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||    
T  1684202 acaaaattaattacatttcttaatacgtgtaaaatgatcaaaac 1684159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 39958228 - 39958185
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  39958228 acaatattaattacattttttaatacgtgtgaaatgaccaaaac 39958185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 44987929 - 44987964
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatg 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  44987929 acaaaattaattacattttttaatacgtgtgaaatg 44987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27003298 - 27003351
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataat 55  Q
    ||||||||||||||||||||||| || ||||||||  || |||||||||||||||    
T  27003298 tacaaaattaattacatttttta-tatgtgtgaaaatataaaaacaacttataat 27003351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2048066 - 2048021
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    ||||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  2048066 tacaatattaattacatttcttaatacgtgtgaaatggtcaaaaca 2048021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11134980 - 11135037
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||||||||||||| || |  || |||||||||||| | |||||||||||||||||||    
T  11134980 tacaaaattaattatatctcctaatacgtgtgaaataaccaaaacaacttataattta 11135037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 16268204 - 16268245
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||||||||||||||||| | ||||||||||||| |||||||    
T  16268204 aaaattaattacatttttaaatacgtgtgaaatgttcaaaac 16268245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 44652262 - 44652221
Alignment:
Q  5 aaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    ||||||||||||||||||| || |||||||||| ||||||||    
T  44652262 aaattaattacattttttaatatgtgtgaaatgctcaaaaca 44652221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 8495492 - 8495548
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||| ||||||||||||| ||| |||||||||||||  ||||||| |||| ||||||    
T  8495492 acaatattaattacatttcttaatacgtgtgaaatggccaaaacatcttacaattta 8495548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45383419 - 45383383
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  45383419 tacaaaattaattgcattttttaatacgtgtgaaatg 45383383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 16736500 - 16736456
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  16736500 acaatattaattacattttttaatacgtgtgaaatgatcaaaaca 16736456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 14294885 - 14294936
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  14294885 aaaattaattacatttttta-ta--tgtgaaatgatcaaaacaacttataattta 14294936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5062191 - 5062149
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaa 44  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  5062191 acaaaattaattacattttttaatacgtgtgaaatgatgaaaa 5062149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 32629055 - 32629115
Alignment:
Q  122 acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgtagta 182  Q
    ||||||| | ||||||||||||||||||| | |||  | ||||||||||||||||||||||    
T  32629055 acctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtgtagta 32629115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 5733215 - 5733172
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||    
T  5733215 acaaaattaattacattttttaatacatgtgaaatgaccaaaac 5733172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 28849170 - 28849213
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  28849170 acaatattaattacatttcttaatacgtgtgaaatgatcaaaac 28849213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 32710114 - 32710169
Alignment:
Q  122 acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtg 177  Q
    ||||||| | |||||||||||||||||||||||||  | || ||||||||||||||    
T  32710114 acctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtg 32710169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 468512 - 468458
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattta 58  Q
    ||||||||||| |||||||| ||||| |||||||||||||||  | |||||||||    
T  468512 aaaattaattatattttttaatacgtatgaaatgatcaaaacgtcgtataattta 468458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 16864150 - 16864184
Alignment:
Q  3 caaaattaattacattttttagtacgtgtgaaatg 37  Q
    ||||||||||||||||| |||||||||||||||||    
T  16864150 caaaattaattacatttcttagtacgtgtgaaatg 16864184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 36466826 - 36466773
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||||||||| |||||||| |||||||||||| || ||||  |||||||||||    
T  36466826 aaaattaattatattttttaatacgtgtgaaataattaaaatgacttataattt 36466773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14584680 - 14584636
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  14584680 acaatattaattacatttcttaatacgtgtgaaatgaccaaaaca 14584636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 40325390 - 40325346
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  40325390 acaatattaattacatttcttaatacgtgtgaaatggtcaaaaca 40325346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24119 - 24174
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataatt 56  Q
    |||| |||||||||||||| ||| || || ||||||||||||||||||||||||||    
T  24119 tacataattaattacatttgttaatatgtttgaaatgatcaaaacaacttataatt 24174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 27737621 - 27737678
Alignment:
Q  122 acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtgta 179  Q
    ||||||||| |||||||||||||||||||||||||  | | || ||||||||||||||    
T  27737621 acctgaagtaaggagttgtttgcatagcttgcttctgcaaggcttccattcatgtgta 27737678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7673974 - 7673931
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||    
T  7673974 acaaaattaattacatttcttaatacgtgtgaaatgctcaaaac 7673931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19556835 - 19556878
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaa 44  Q
    |||||||||||||| |||||||| |||||||||||||| |||||    
T  19556835 tacaaaattaattatattttttaatacgtgtgaaatgaccaaaa 19556878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 49615510 - 49615544
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaat 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  49615510 acaaaattaattacattttttaatacgtgtgaaat 49615544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39144475 - 39144439
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatg 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39144475 tacaaaattaattatattttttaatacgtgtgaaatg 39144439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 39290736 - 39290780
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    ||||||||||||| |||||||| ||||||||||||| | ||||||    
T  39290736 acaaaattaattatattttttaatacgtgtgaaatgcttaaaaca 39290780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 487674 - 487727
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||| |||||||||    
T  487674 aaaattaattacatttcttaatacgtgtgaaattctcaaaacaatttataattt 487727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 6540531 - 6540488
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  6540531 acaatattaattacatttcttaatacgtgtgaaatgatcaaaac 6540488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 44464338 - 44464404
Alignment:
Q  7 attaattacattttttagtacgtgtgaaatgatcaaaacaacttataatttactgcggagaaagtat 73  Q
    ||||||||||||| ||| ||||| ||||||| | ||||||| ||||||||||   ||||||||||||    
T  44464338 attaattacatttcttaatacgtttgaaatggtgaaaacaatttataatttaggacggagaaagtat 44464404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15240802 - 15240830
Alignment:
Q  1 tacaaaattaattacattttttagtacgt 29  Q
    |||||||||||||||||||||||||||||    
T  15240802 tacaaaattaattacattttttagtacgt 15240830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17633800 - 17633856
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||||||||| ||||||||||| | ||||| ||||| ||||||  |||||||||||    
T  17633800 tacaaaattaactacattttttaatgcgtgtaaaatggtcaaaaacacttataattt 17633856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 46288146 - 46288202
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||||||||||||  |||||||| ||||||||||||||  |||| || |||||||||    
T  46288146 tacaaaattaattgtattttttaatacgtgtgaaatgacaaaaataatttataattt 46288202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48070364 - 48070308
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||||||| |||| |||| ||| |  |||||||||||||||||||| |||||||||    
T  48070364 tacaaaatttattatatttattaatttgtgtgaaatgatcaaaacaatttataattt 48070308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 13522 - 13565
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaac 45  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  13522 acaatattaattacattttttaatacgtgtgaaatgaccaaaac 13565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 17672 - 17727
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    |||| ||||||||||||| ||| |||||||||||||| ||||||| |||| |||||    
T  17672 acaatattaattacatttcttaatacgtgtgaaatgaccaaaacatcttacaattt 17727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39612947 - 39612989
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaa 43  Q
    ||||||||||||||||||||||| || || |||||||||||||    
T  39612947 tacaaaattaattacattttttaatatgtatgaaatgatcaaa 39612989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 31196119 - 31196086
Alignment:
Q  4 aaaattaattacattttttagtacgtgtgaaatg 37  Q
    |||||||||||||||||||| |||||||||||||    
T  31196119 aaaattaattacattttttaatacgtgtgaaatg 31196086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7196825 - 7196881
Alignment:
Q  1 tacaaaattaattacattttttagtacgtgtgaaatgatcaaaacaacttataattt 57  Q
    ||||||||||||||||||| ||| |  |||||||||| ||||||  |||||||||||    
T  7196825 tacaaaattaattacatttcttaatttgtgtgaaatggtcaaaatgacttataattt 7196881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 8650 - 8694
Alignment:
Q  2 acaaaattaattacattttttagtacgtgtgaaatgatcaaaaca 46  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  8650 acaatattaattacatttcttaatacgtgtgaaatgaccaaaaca 8694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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