View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20449_low_2 (Length: 385)
Name: NF20449_low_2
Description: NF20449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20449_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 65 - 381
Target Start/End: Original strand, 9829716 - 9830033
Alignment:
| Q |
65 |
atttttgggatattgagtttgactcctaaaaatagaaagnnnnnnnnn-catgaccacgactttaaaggaaggtagtaaaatagtattccctgttaaaga |
163 |
Q |
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| T |
9829716 |
atttttgggatattgagtttgactcctaaaaatagaaagaaaaaaaaaacatgaccacgactttaaaggaaggtagtaaaatagtattccctgttaaaga |
9829815 |
T |
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| Q |
164 |
gagattgatgagagtcatatagtagttttatcatcatttaggagctagttttaggtcttcctagtaaagtttcagttgttttagtcgagtctttgaaaat |
263 |
Q |
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| T |
9829816 |
gagattgatgacagacatatagtagttttatcatcatttaggagctagttttaggtctttctagtaaagtttcagttgttttagtcgagtctttgaaaat |
9829915 |
T |
|
| Q |
264 |
aaatcaacatggatgcacaaaagagagaaaaatgaagaatgggaccttgaaacatgacaatcactcaaaccaagcaacttcatggtcacattatactttt |
363 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| || |
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| T |
9829916 |
aaatcaacatggatgcgcaaaagagagaaaaatgaagaatgggaccttgaaacatgacaatcacttaaaccaggcaacttcatggtcgcattatactctt |
9830015 |
T |
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| Q |
364 |
tataagaatatcaaagtg |
381 |
Q |
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|| ||||||||||||||| |
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| T |
9830016 |
tacaagaatatcaaagtg |
9830033 |
T |
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