View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20449_low_3 (Length: 378)
Name: NF20449_low_3
Description: NF20449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20449_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 13505804 - 13505460
Alignment:
| Q |
18 |
ataacaaggtaaatgtcatcaataaacttcatatcaaaatgtcagcatcgtttcactaatcctttgannnnnnnnnnaataacaaattcatcgtcaaaaa |
117 |
Q |
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| T |
13505804 |
ataacaaggtaaatgtcatcaataaacttcatatcagaatgtcagcatcgtttcactaatcctttgattttttttt-aataacagattcatcgtcaaaaa |
13505706 |
T |
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| Q |
118 |
gtttactctcttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagctcaaagggaaaatacgtatttgt |
217 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
13505705 |
ttttactctcttgaatgtgcgacattgatgaaagataaaatacatcattaaaaaagggtgaaatgagaattattagctcaaagggaaaataaatatttgt |
13505606 |
T |
|
| Q |
218 |
tgcattcatttaaaaaatcatatctgctaaatatattatttgccaatgattatcctttgagacattatcaattaataattatcttttgtattaataatct |
317 |
Q |
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| T |
13505605 |
tgcattcatttaaaaaatcatatctgctaaatatattatttgccaatgattatcctttgcgacattatcaattaataattatcttttgtattaataatct |
13505506 |
T |
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| Q |
318 |
taagtaactattttatctaatttagcaatctgcacaagagatctat |
363 |
Q |
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| T |
13505505 |
taggtaactattttatctaatttagcaatctgcacaagagatctat |
13505460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 28 - 363
Target Start/End: Complemental strand, 2907482 - 2907151
Alignment:
| Q |
28 |
aaatgtcatcaataaacttcatatcaaaatgtcagcatcgtttcactaatcctttgannnnnnnnnnaataacaaattcatcgtcaaaaagtttactctc |
127 |
Q |
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| T |
2907482 |
aaatgtcatcaataaacttcatatcagaatgtcaacatcgtttcactaatcctatgattatttt---aataatagattcatcgtcaaaaaatttattctc |
2907386 |
T |
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| Q |
128 |
ttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagctcaaagggaaaatacgtatttgttgcattcatt |
227 |
Q |
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|||||||||| |||||||| || ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2907385 |
ttgaatgtgcgacattgatttaagataaaatacatcattagaacaggatgaaatgagaattattagctcaaagggaaaatacgtatttgttgcattcatt |
2907286 |
T |
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| Q |
228 |
taaaaaatcatatctgctaaatatattatttgccaatgattatcctttgagacattatcaattaataattatcttttgtattaataatcttaagtaacta |
327 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
2907285 |
taaaaaattatatcggctaaatatattatttgccaatgattatcctttgagacattgtcaa-taataattatcttttgtattaataatcttaggtaacta |
2907187 |
T |
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| Q |
328 |
ttttatctaatttagcaatctgcacaagagatctat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2907186 |
ttttatctaatttagcaatctgcacaagagatctat |
2907151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 40798476 - 40798642
Alignment:
| Q |
103 |
attcatcgtcaaaaagtttactctcttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagctcaaaggg |
202 |
Q |
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||||||| || |||| ||||| |||||| ||||| |||||||||| |||||| ||| |||| ||||| ||| ||| |||||||||||||||||| | |
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| T |
40798476 |
attcatcctcgaaaaatttacgctcttgggtgtgcgacattgatgacggataaaacacaacatttgaaaatggtgaaaagagaattattagctcaaa-ga |
40798574 |
T |
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| Q |
203 |
aaaatacgtatttgttgcattcattt---aaaaaatcatatctgctaaatatattatttgccaatgatta |
269 |
Q |
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|||||| |||| |||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||| |
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| T |
40798575 |
aaaataggtatctgttgcattcatttaaaaaaaaatcctatctactaa--atattatttcccaatgatta |
40798642 |
T |
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