View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20449_low_4 (Length: 336)

Name: NF20449_low_4
Description: NF20449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20449_low_4
NF20449_low_4
[»] chr7 (3 HSPs)
chr7 (6-336)||(29685565-29685900)
chr7 (83-317)||(29680145-29680376)
chr7 (41-145)||(29668370-29668482)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 29685900 - 29685565
Alignment:
Q  6 gaggaggagcagagagtagtgacggttacctggttgttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgtt 105  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29685900 gaggatgagcaaagagtagtgacggttacctggttgttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgtt 29685801  T
Q  106 atctcactactacctagtgtgaacacataccctaattagtgttagnnnnnnnnnccacacagattaagaaatcacaatttgtacccnnnnnnntctcata 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||       |||||||    
T  29685800 atctcactactacctattgtgaacacataccctaattagtgttagtttttttttccacacagattaagaaatcacaatttgtacccaaaaaaatctcata 29685701  T
Q  206 gttttagttttttaaccataatcaataaatgaattttgctgttaa-----nnnnnnnnnattttgcaattggagtgaagaggctgatcagtggagactga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||| |     
T  29685700 gttttagttttttaaccataatcaataaatgaattttgctgttaattttttttttttttattttgcaattggagtgaagaggctgatcagtggagaccgg 29685601  T
Q  301 agagtagtgaagtgagagaaaccagtagaagaagag 336  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29685600 agagtagtgaagtgagagaaatcagtagaagaagag 29685565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 83 - 317
Target Start/End: Complemental strand, 29680376 - 29680145
Alignment:
Q  83 aaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattagtgttagnnnnnnnnnccacacagattaagaaatcacaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |            ||||||||||||||||||||||    
T  29680376 aaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattgttagtttttttttgtcacacacagattaagaaatcacaa 29680277  T
Q  183 tttgtacccnnnnnnntctcatagttttag-ttttttaaccataatcaataaatgaattttgctgttaannnnnnnnnattttgcaattggagtgaagag 281  Q
    |||||||||       ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||         |||||||| |||||||||||||    
T  29680276 tttgtacccaacaaaatctcataattttagtttttttaaccataatcaataaatgaattttgatgttaa-atttttttattttgcatttggagtgaagag 29680178  T
Q  282 gctgatcagtggagactgaagagtagtgaagtgaga 317  Q
     |||   ||||||||||| |||||||||||||||||    
T  29680177 actg---agtggagactggagagtagtgaagtgaga 29680145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 29668482 - 29668370
Alignment:
Q  41 gttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgttatct--------cactactacctagtgtgaacaca 132  Q
    |||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||| |||||||||         ||||||| ||||||||||||||    
T  29668482 gttggtccgtaaataggaagacaaaggtatattggtatagtcaaaggaaaggaaaggatcgtgttatcttatctccctactactatctagtgtgaacaca 29668383  T
Q  133 taccctaattagt 145  Q
    | |||||||||||    
T  29668382 tgccctaattagt 29668370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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