View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20450_high_1 (Length: 367)
Name: NF20450_high_1
Description: NF20450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20450_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 40363491 - 40363147
Alignment:
| Q |
22 |
gtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgtgaccatcttcatattgaactacgaaccacccagcatcattg |
121 |
Q |
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| T |
40363491 |
gtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgtgaccatcttcatattgaactacgaaccacccagcatcattg |
40363392 |
T |
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| Q |
122 |
gtatagtcaattaccctccccgacaaaatatttcccatatacaatactatttggaactcccttcccaagaaccattcgaaatttccatcattgtccattt |
221 |
Q |
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| T |
40363391 |
gtatagtcaattaccctccccgacaaaatatttcccatatacaatactatttggaactcccttcccaagaaccattcgaaatttccatcattgtccattt |
40363292 |
T |
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| Q |
222 |
ggaatagaaacctat------aagnnnnnnntcaattaaatagtatggagatataatctaatttctaagcaagattttaaccagagtttgaatgaaacca |
315 |
Q |
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| T |
40363291 |
ggaatagaaacctataaaaaaaaaaaaaaaatcaattaaatagtatggagatataatctaatttctaagcaagattttaaccagagtttgaatgaaacca |
40363192 |
T |
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| Q |
316 |
gtgagagtgtagtgtaataccgtaccagaatgttgatatattctt |
360 |
Q |
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| T |
40363191 |
atgagagtgtagtgtaataccgtaccagaatgttgatatattctt |
40363147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 11346525 - 11346464
Alignment:
| Q |
18 |
aattgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgt |
80 |
Q |
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| T |
11346525 |
aattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttcttctgtgt |
11346464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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