View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20450_high_4 (Length: 296)

Name: NF20450_high_4
Description: NF20450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20450_high_4
NF20450_high_4
[»] chr6 (10 HSPs)
chr6 (23-296)||(11170607-11170880)
chr6 (34-296)||(11209440-11209702)
chr6 (24-296)||(11275992-11276264)
chr6 (38-296)||(11199940-11200198)
chr6 (38-296)||(11196775-11197033)
chr6 (38-296)||(11156322-11156580)
chr6 (38-296)||(11161189-11161455)
chr6 (112-296)||(11241304-11241488)
chr6 (24-296)||(11133032-11133304)
chr6 (39-199)||(11314688-11314848)
[»] scaffold1207 (1 HSPs)
scaffold1207 (37-296)||(939-1195)
[»] chr7 (13 HSPs)
chr7 (222-296)||(10494232-10494306)
chr7 (222-296)||(13333314-13333388)
chr7 (222-296)||(8585564-8585638)
chr7 (222-296)||(8628768-8628842)
chr7 (222-296)||(27830733-27830807)
chr7 (225-296)||(8382734-8382805)
chr7 (225-296)||(8602213-8602284)
chr7 (222-292)||(8667655-8667725)
chr7 (222-292)||(8671492-8671562)
chr7 (229-296)||(3147515-3147582)
chr7 (229-291)||(29577532-29577594)
chr7 (225-290)||(8570550-8570615)
chr7 (222-262)||(8654686-8654726)
[»] chr1 (1 HSPs)
chr1 (222-292)||(34466655-34466725)
[»] chr2 (4 HSPs)
chr2 (222-296)||(16661850-16661924)
chr2 (222-296)||(7542462-7542536)
chr2 (222-296)||(14703644-14703718)
chr2 (222-296)||(16657375-16657449)
[»] chr4 (3 HSPs)
chr4 (223-292)||(9335753-9335822)
chr4 (223-296)||(30775489-30775562)
chr4 (222-296)||(35132684-35132758)
[»] chr8 (1 HSPs)
chr8 (40-104)||(12528558-12528622)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 11170607 - 11170880
Alignment:
Q  23 gtttatgatttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacatt 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||    
T  11170607 gtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacatt 11170706  T
Q  123 gatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170707 gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag 11170806  T
Q  223 tcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11170807 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacc 11170880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 34 - 296
Target Start/End: Original strand, 11209440 - 11209702
Alignment:
Q  34 ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  11209440 ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccat 11209539  T
Q  134 cctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| ||||||    
T  11209540 cctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccata 11209639  T
Q  234 tgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11209640 tgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacc 11209702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 11275992 - 11276264
Alignment:
Q  24 tttatgatttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattg 123  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  11275992 tttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattg 11276091  T
Q  124 atatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagt 223  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  11276092 atatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgt 11276191  T
Q  224 caaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
     || ||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||||    
T  11276192 taaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacc 11276264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 11199940 - 11200198
Alignment:
Q  38 agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcctc 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||   ||| ||||||||||||||| |||||| |||    
T  11199940 agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctc 11200039  T
Q  138 aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca 237  Q
    |||||||||||  ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  11200040 aaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgca 11200139  T
Q  238 attgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11200140 attgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacc 11200198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 11196775 - 11197033
Alignment:
Q  38 agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcctc 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||   ||| ||||||||||||||| |||| | |||    
T  11196775 agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctc 11196874  T
Q  138 aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca 237  Q
    |||||||||||  |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||    
T  11196875 aaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgca 11196974  T
Q  238 attgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  11196975 attgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacc 11197033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 11156322 - 11156580
Alignment:
Q  38 agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcctc 137  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||   ||| ||||||||||||||| |||| | |||    
T  11156322 agaactcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctc 11156421  T
Q  138 aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca 237  Q
    |||||||||||  |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||    
T  11156422 aaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgca 11156521  T
Q  238 attgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  11156522 attgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacc 11156580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 11161189 - 11161455
Alignment:
Q  38 agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcctc 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||   ||| ||||||||||||||| |||||  |||    
T  11161189 agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctc 11161288  T
Q  138 aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca 237  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||    
T  11161289 aaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgca 11161388  T
Q  238 attgctgctgcagtaggc--------tcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||  |||||||||||        |||||||||| ||||| |||||| |||||| ||||||||||    
T  11161389 attgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacc 11161455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 11241488 - 11241304
Alignment:
Q  112 gccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa 211  Q
    ||||||||||||||| |||||| ||||||||||||||  |||||||||| ||||||||||||||| || ||||| | ||||| |||||||||||||||||    
T  11241488 gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa 11241389  T
Q  212 atggtttcaagtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
      | ||||| || ||||||||||||||||||  |||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  11241388 gagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacc 11241304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 11133032 - 11133304
Alignment:
Q  24 tttatgatttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattg 123  Q
    |||||| || ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||  | |||| |||    ||    
T  11133032 tttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtg 11133131  T
Q  124 atatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagt 223  Q
    ||  ||   |  || |||||||||| |||||| ||||| |||||||| ||||| |||||||  ||||||| | ||    |||||||||| ||||||  ||    
T  11133132 attccattcttatcgaatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgt 11133231  T
Q  224 caaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||| |||||||||||||| ||||| |||||||| ||||||||||||| ||| ||||| || |||||| ||||    
T  11133232 caagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacc 11133304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 11314848 - 11314688
Alignment:
Q  39 gaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcctca 138  Q
    |||| ||| ||||||||  |||||||||| |||||  |||||||||||||| ||||||||||||||   || |||| |||| |||||  |||||| ||||    
T  11314848 gaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctca 11314749  T
Q  139 aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac 199  Q
    | |||||||| |||||| ||||||||||| ||||| || || || ||||||||||||||||    
T  11314748 agtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac 11314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 939 - 1195
Alignment:
Q  37 aagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccatcct 136  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||   ||| |||||||||||||||||||||| ||    
T  939 aagaacactttcacaaaatggttcaccattgcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattct 1038  T
Q  137 caaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgc 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||     |||||||   ||||| |||||||||    
T  1039 caaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatg---tgatggttttgtgtcaaagccatatgc 1135  T
Q  237 aattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1136 aattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacc 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 10494306 - 10494232
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| || |  ||||| |||||||||||||||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcacc 10494232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 13333388 - 13333314
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||| |  | ||| |||||||||||||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcacc 13333314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 8585638 - 8585564
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||| | || |||||| ||||||||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcacc 8585564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 8628768 - 8628842
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||| | || |||||| ||||||||||| |||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcacc 8628842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| |||||||||||  | ||||| |||| |||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 8382805 - 8382734
Alignment:
Q  225 aaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||||||||||||  || || ||||| |||||||||||||| ||||  ||||||||||||||||| |||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcacc 8382734  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 8602213 - 8602284
Alignment:
Q  225 aaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||||||||||||  || |||||||| |||||||||||||| ||||  |||||||| |||||||| |||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcacc 8602284  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 8667655 - 8667725
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatag 292  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| || |  ||||| || ||||||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatag 8667725  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 8671562 - 8671492
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatag 292  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| || |  ||||| || ||||||||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatag 8671492  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 3147515 - 3147582
Alignment:
Q  229 ccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||| ||||| ||||| |||||||| ||||||||||| |||| || ||| |||||||||||| ||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacacc 3147582  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  229 ccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaata 291  Q
    |||||||||| ||| || ||||| || ||||||||||| ||||  ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 8570550 - 8570615
Alignment:
Q  225 aaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaat 290  Q
    ||||||||||||||  ||||| ||||| || ||||||||||| ||||  |||||||| ||||||||    
T  8570550 aaggccatatgcaagagctgccgcagtcggttcattgattatccgcattacattgagaccagcaat 8570615  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 8654686 - 8654726
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattga 262  Q
    |||||||||||||||||| ||||| |||||||| |||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattga 8654726  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 34466725 - 34466655
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatag 292  Q
    |||||| ||||||||||| ||||| ||||| || |||||||||||| |||||||||| |||||||||||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatag 34466655  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 16661924 - 16661850
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||||||||| || ||||||||||| | || ||| || ||||||||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcacc 16661850  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 7542462 - 7542536
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||  ||||| |||||||| ||||| |||   | || |||||||||||||||||| |||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacc 7542536  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 14703644 - 14703718
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||| ||||| || ||||| ||||| ||||  | || |||||||||||| |||||| ||||    
T  14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacacc 14703718  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 16657449 - 16657375
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||| ||||||||||| ||||| |||||||| |||||||| ||||| |  ||||| |||||||| || |||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcacc 16657375  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 9335822 - 9335753
Alignment:
Q  223 tcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatag 292  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| || |  ||||| |||||||||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatag 9335753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 30775489 - 30775562
Alignment:
Q  223 tcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||||| || |||||| || |||||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcacc 30775562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 35132684 - 35132758
Alignment:
Q  222 gtcaaggccatatgcaattgctgctgcagtaggctcattgattattcgcaaaacattgaggccagcaatagcacc 296  Q
    |||||||||||||||||  ||||| |||||||| ||||| |||| || || ||||||| | ||||||||||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcacc 35132758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 12528558 - 12528622
Alignment:
Q  40 aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcc 104  Q
    |||||||||||||| || |||||||||  |||||||||||| | ||| || ||||||||||||||    
T  12528558 aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc 12528622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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