View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20450_low_5 (Length: 289)
Name: NF20450_low_5
Description: NF20450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20450_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34867948 - 34867676
Alignment:
| Q |
1 |
ctagacatgatatagacacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaaatacg |
100 |
Q |
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| T |
34867948 |
ctagacatgatatagacacggacacgtcgacaccaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaaatacg |
34867849 |
T |
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| Q |
101 |
tgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttaataagacaagaatcaggtttggatttggcaaatttgaaaccaa |
200 |
Q |
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| T |
34867848 |
tgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttgataagacaagaatcaagtttggatttggcaaatttgaaaccaa |
34867749 |
T |
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| Q |
201 |
atctgagtcctgtatctaaaatgattttggggaattctgtgtaaaactgaatcgaggatagaatcagtaaaat |
273 |
Q |
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| T |
34867748 |
atctaagtcctgtatctaaaatgattttggggaattctgcgtaaaactgaatcgaggatagaatcagtaaaat |
34867676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 9024248 - 9024178
Alignment:
| Q |
16 |
acacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
86 |
Q |
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| T |
9024248 |
acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt |
9024178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 42874536 - 42874588
Alignment:
| Q |
43 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaa |
95 |
Q |
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| T |
42874536 |
tttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaa |
42874588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 23287415 - 23287351
Alignment:
| Q |
22 |
acacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
86 |
Q |
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| T |
23287415 |
acacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtgtcagtgt |
23287351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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