View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20450_low_7 (Length: 252)

Name: NF20450_low_7
Description: NF20450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20450_low_7
NF20450_low_7
[»] chr1 (9 HSPs)
chr1 (41-252)||(28260295-28260506)
chr1 (100-252)||(45085540-45085692)
chr1 (116-242)||(11923700-11923828)
chr1 (101-252)||(22169806-22169961)
chr1 (124-252)||(50005268-50005398)
chr1 (137-224)||(13192982-13193069)
chr1 (153-252)||(50335742-50335842)
chr1 (1-52)||(50005467-50005519)
chr1 (1-74)||(13193187-13193261)
[»] chr8 (14 HSPs)
chr8 (106-252)||(12310665-12310809)
chr8 (101-252)||(28855936-28856089)
chr8 (99-252)||(15081369-15081518)
chr8 (106-252)||(9295135-9295281)
chr8 (100-237)||(37490871-37491007)
chr8 (129-252)||(2262568-2262692)
chr8 (101-213)||(10456372-10456490)
chr8 (109-252)||(38082228-38082374)
chr8 (1-94)||(12310517-12310611)
chr8 (121-248)||(10404794-10404922)
chr8 (184-241)||(26150567-26150624)
chr8 (137-173)||(14130027-14130063)
chr8 (137-173)||(14117936-14117972)
chr8 (1-52)||(16848380-16848432)
[»] chr6 (3 HSPs)
chr6 (100-252)||(27142618-27142768)
chr6 (101-242)||(8568741-8568886)
chr6 (145-185)||(27822304-27822344)
[»] chr4 (9 HSPs)
chr4 (101-252)||(18490301-18490455)
chr4 (121-252)||(54239422-54239554)
chr4 (137-216)||(28287567-28287646)
chr4 (109-252)||(15634464-15634611)
chr4 (145-248)||(34943596-34943699)
chr4 (121-185)||(34949198-34949261)
chr4 (6-52)||(15634370-15634417)
chr4 (2-99)||(28287398-28287496)
chr4 (137-173)||(22486960-22486996)
[»] chr7 (6 HSPs)
chr7 (100-247)||(32936906-32937055)
chr7 (101-216)||(32052834-32052951)
chr7 (141-185)||(4888871-4888915)
chr7 (19-74)||(32052716-32052771)
chr7 (121-252)||(22572530-22572662)
chr7 (141-185)||(3778894-3778938)
[»] chr3 (4 HSPs)
chr3 (116-239)||(1151013-1151137)
chr3 (137-250)||(33528308-33528421)
chr3 (1-60)||(1150860-1150920)
chr3 (121-157)||(25340319-25340355)
[»] chr5 (5 HSPs)
chr5 (99-251)||(36844473-36844626)
chr5 (99-252)||(35160869-35161023)
chr5 (121-252)||(15385096-15385229)
chr5 (101-242)||(7775211-7775355)
chr5 (109-246)||(14503920-14504060)
[»] chr2 (4 HSPs)
chr2 (99-249)||(3273341-3273493)
chr2 (1-90)||(5840764-5840854)
chr2 (165-252)||(5841165-5841251)
chr2 (116-183)||(5840913-5840981)
[»] scaffold0251 (1 HSPs)
scaffold0251 (121-252)||(8298-8431)
[»] scaffold0154 (2 HSPs)
scaffold0154 (99-237)||(28895-29035)
scaffold0154 (1-49)||(29059-29108)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 28260506 - 28260295
Alignment:
Q  41 accttttcggaaggggaattctctcacaagcataactcatcgttttgccatgatgtaggcatttctattatttcaacaactttattatttttctggtttg 140  Q
    ||||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28260506 accttttcgaaaaggaaattctctcacaagcataactcatctttttgccatgatgtaggcatttctattatttcaacaactttattatttttctggtttg 28260407  T
Q  141 tttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaaaata 240  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28260406 tttcggtttgttattttcggtccattagggtttgttctttccctagtatttaaactaaactttcgtagcctaaaaggcagttttgcattcaataaaaata 28260307  T
Q  241 tcgagaactttt 252  Q
    ||||||||||||    
T  28260306 tcgagaactttt 28260295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 45085540 - 45085692
Alignment:
Q  100 catttctattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaa 199  Q
    ||||| |||||||||||||| ||||||| ||||||  || |||||||||||||||||||||| || ||| ||||||| |||| || |||||||| |||||    
T  45085540 catttttattatttcaacaaatttattaattttctatttcgtttcagtttgttattttcggttcagtagggtttgttatttctctggtatttaacctaaa 45085639  T
Q  200 ctttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
       | ||||| |||||||||||||| |||||||||||  ||| ||||||||||    
T  45085640 tggtggtagcctaagaggcagtttttcattcaataaacttattgagaactttt 45085692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 11923700 - 11923828
Alignment:
Q  116 acaactttattatttttctggtttg--tttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaa 213  Q
    |||||||||||||||||||| |||   ||| |  |||||||| ||||  |||||||||||||| |||||||||||||||| |||||| |||||||| |||    
T  11923700 acaactttattatttttctgtttttcatttaatattgttattatcggctcattagagtttgttatttccctagtatttaagctaaacattcgtagcctaa 11923799  T
Q  214 gaggcagttttgcattcaataaaaatatc 242  Q
    ||| ||||||| |||||||||||| ||||    
T  11923800 gagacagttttccattcaataaaattatc 11923828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 22169806 - 22169961
Alignment:
Q  101 atttctattatttcaaca--actttattatttttctggtttgttt-cagtttgttattttcggtccattagagtttgttctttccctagtatttaaacta 197  Q
    |||| |||||||||||||  |||||||||| ||| || ||| ||| |||||| ||||||||||  | |||||||||||| ||| ||||||||||||||||    
T  22169806 atttttattatttcaacacaactttattatatttatgttttattttcagttttttattttcggctcgttagagtttgttattttcctagtatttaaacta 22169905  T
Q  198 aactttcgtagcttaagaggcagttttgcattcaataaaaa-tatcgagaactttt 252  Q
    ||| || ||||| ||||||| ||||||  |||||||||||| ||| ||||||||||    
T  22169906 aacattagtagcctaagaggtagtttttgattcaataaaaattatagagaactttt 22169961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 50005398 - 50005268
Alignment:
Q  124 attatttttctggtttgtttcagtttgttatttt-cggtccattagagtttgttcttt-ccctagtatttaaactaaactttcgtagcttaagaggcagt 221  Q
    |||||||||||| ||| ||||||||||||||||| ||| || || ||||| ||| ||| ||||| |||||||||  |||||||||||| |||||| ||      
T  50005398 attatttttctgttttatttcagtttgttatttttcggcccgttcgagttcgttattttccctattatttaaacagaactttcgtagcctaagagacacc 50005299  T
Q  222 tttgcattcaataaaaatatcgagaactttt 252  Q
    ||| |||||||||||| ||||||||||||||    
T  50005298 ttttcattcaataaaattatcgagaactttt 50005268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 13193069 - 13192982
Alignment:
Q  137 tttgtttcagtttgttatttt-cggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagtttt 224  Q
    ||||||||||||||||||||| | | ||||| ||||||||| ||||||||||||||||  ||||| ||| |||| ||||| ||||||||    
T  13193069 tttgtttcagtttgttatttttcagcccatt-gagtttgttatttccctagtatttaagttaaacattcatagcctaagatgcagtttt 13192982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 50335742 - 50335842
Alignment:
Q  153 attttcggtccattagagttt-gttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaacttt 251  Q
    |||||||| |||||||||||| ||| |||||||||||||||| || ||| || ||||  |||||  ||||||| |||| ||||||| ||| |||||||||    
T  50335742 attttcggcccattagagttttgttatttccctagtatttaagcttaacatttgtagtctaagatacagtttttcatttaataaaattattgagaacttt 50335841  T
Q  252 t 252  Q
    |    
T  50335842 t 50335842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50005519 - 50005467
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaa 52  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||    
T  50005519 agtgcagatttgatatccgatgtcagattgactcgaattataccttttcggaa 50005467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13193261 - 13193187
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaaggggaattctctcacaagcata 74  Q
    |||||||||||||||| |  ||||  |||||||| |||||||||||||||||| |||||||  ||||| ||||||    
T  13193261 agtgcagatttgacattcaatgtcatattgactcgaattataccttttcggaaagggaatttcctcacgagcata 13193187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 12310665 - 12310809
Alignment:
Q  106 tattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcg 205  Q
    |||||||||| |||||  |||||||||||| || |||| |||||||||||||||| ||||| | ||||||| | || || ||||||||||||||||||||    
T  12310665 tattatttcagcaact--attatttttctgtttagttttagtttgttattttcggcccattggggtttgttatatctctcgtatttaaactaaactttcg 12310762  T
Q  206 tagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    |||| |||||||||  ||| ||||||||||||||||||| |||||||    
T  12310763 tagcctaagaggcaacttttcattcaataaaaatatcgataactttt 12310809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 28856089 - 28855936
Alignment:
Q  101 atttctattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaac 200  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||  |||| || ||||||||||||||||| ||||     
T  28856089 atttttattatttcagcaactttattatttttctgttttgttttaatttgttattttcgatccattaaggtttattatttccctagtatttaaaataaat 28855990  T
Q  201 tttcgtagcttaagaggcagtttt--gcattcaataaaaatatcgagaactttt 252  Q
    ||||| |   |||| |||||||||   |||||||| ||||||||||||||||||    
T  28855989 tttcgcactctaaggggcagtttttcccattcaatcaaaatatcgagaactttt 28855936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 252
Target Start/End: Original strand, 15081369 - 15081518
Alignment:
Q  99 gcatttctattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaa 198  Q
    |||||| |||||||||| ||| ||||| ||||||    ||| ||||| ||||||||||| ||  |||||||||||||| |||  ||||||||||||| ||    
T  15081369 gcatttttattatttcagcaaatttatcattttt----tttatttcaatttgttatttttggctcattagagtttgttatttttctagtatttaaacaaa 15081464  T
Q  199 actttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    ||||||||||  |||||||||||||| | |||||||||| ||||||||||||||    
T  15081465 actttcgtagtctaagaggcagtttttccttcaataaaattatcgagaactttt 15081518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 9295135 - 9295281
Alignment:
Q  106 tattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcg 205  Q
    ||||||||||  || ||||||| ||||| | ||| | ||||||| |||||||||   |||||| ||||||| |||| ||||||||||||||||||||| |    
T  9295135 tattatttcaggaaatttattaattttccgttttatctcagtttcttattttcgtctcattagggtttgttatttctctagtatttaaactaaacttttg 9295234  T
Q  206 tagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    ||| || |||| ||||||| |||||||||||| ||||||||||||||    
T  9295235 tagtttcagagacagttttacattcaataaaattatcgagaactttt 9295281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 37491007 - 37490871
Alignment:
Q  100 catttctattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaa 199  Q
    ||||| ||||||| |||||| ||||||||||| ||| |||||||| |||| ||||||||||  ||||||| | |||| ||||||||||||| ||||||||    
T  37491007 catttttattattccaacaattttattatttt-ctgttttgtttcggtttattattttcggcacattagaatctgttatttccctagtattcaaactaaa 37490909  T
Q  200 ctttcgtagcttaagaggcagttttgcattcaataaaa 237  Q
    |||||||| | ||||| ||| |||| ||||||||||||    
T  37490908 ctttcgtaacctaagatgcattttttcattcaataaaa 37490871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 2262568 - 2262692
Alignment:
Q  129 ttttctggtttgtttcagtttgttatttt-cggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgca 227  Q
    ||||||| ||| ||||||||||||||||| ||| |||||||  |||||| ||||||||||||||||||  |||||||||||  ||||| |||||||| ||    
T  2262568 ttttctgttttatttcagtttgttatttttcggcccattaggatttgttatttccctagtatttaaacataactttcgtagtctaagatgcagtttttca 2262667  T
Q  228 ttcaataaaaatatcgagaactttt 252  Q
    ||||||||||  || ||||||||||    
T  2262668 ttcaataaaatcatggagaactttt 2262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 10456490 - 10456372
Alignment:
Q  101 atttctattatttcaaca--actttattatttttctggtttgtttc---agtttgttattttcggtcca-ttagagtttgttctttccctagtatttaaa 194  Q
    |||| |||||||||||||  | ||||||||||||||| ||| ||||   |||||||||||||||| ||| |||| ||||||| ||| |||||||||||||    
T  10456490 atttttattatttcaacacaattttattatttttctgttttttttcttcagtttgttattttcggcccaattagggtttgttattttcctagtatttaaa 10456391  T
Q  195 ctaaactttcgtagcttaa 213  Q
    |||||||||||||||||||    
T  10456390 ctaaactttcgtagcttaa 10456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 38082374 - 38082228
Alignment:
Q  109 tatttcaacaactttattatttttctggtttgtttcagtttgttatttt-cggtccattagagtttgttctttcc-ctagtatttaaactaaactttcgt 206  Q
    ||||||||||  ||||||||||||||| ||| |||  |||||||||||| | | ||||  ||||||||| ||||| |||||||||||||  |||||||||    
T  38082374 tatttcaacatatttattatttttctgttttatttt-gtttgttatttttcagcccatacgagtttgttatttcctctagtatttaaacataactttcgt 38082276  T
Q  207 agcttaagaggca-gttttgcattcaataaaaa-tatcgagaactttt 252  Q
    ||| |||||||||  |||| ||||||||||||| ||||||||||||||    
T  38082275 agcctaagaggcacttttttcattcaataaaaattatcgagaactttt 38082228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12310517 - 12310611
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaaggggaattctctcacaagcataactcatcgttttgccatgat 94  Q
    |||||||||||| |||||| ||||||||||||||||||||||| |||| ||||  ||||||   |||| |||||||| ||| | |||||||||||    
T  12310517 agtgcagatttggcatccgatgtcggattgactcaaattatacttttttggaaacggaatttgatcacgagcataacccatggctttgccatgat 12310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 10404794 - 10404922
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggca- 219  Q
    ||||||||||||||| ||| ||||||||||||||||||    |||| | ||||||| || ||| |  |||||| |  | |||||||||| |||||||||     
T  10404794 tttattatttttctgttttatttcagtttgttattttccccacattcgggtttgttattcccccatcatttaaccagagctttcgtagcctaagaggcac 10404893  T
Q  220 gttttgcattcaataaaaatatcgagaac 248  Q
     |||| |||||||||||| ||||||||||    
T  10404894 ttttttcattcaataaaattatcgagaac 10404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 26150567 - 26150624
Alignment:
Q  184 tagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaaaatat 241  Q
    |||||||||||| ||||||  | ||||||||||||| |||| ||||||||||||||||    
T  26150567 tagtatttaaacaaaacttatgcagcttaagaggcactttttcattcaataaaaatat 26150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 14130027 - 14130063
Alignment:
Q  137 tttgtttcagtttgttattttcggtccattagagttt 173  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14130027 tttgttccagtttgttattttcggtccattagagttt 14130063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 14117936 - 14117972
Alignment:
Q  137 tttgtttcagtttgttattttcggtccattagagttt 173  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  14117936 tttgttttagtttgttattttcggcccattagagttt 14117972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16848380 - 16848432
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaa 52  Q
    ||||||||||||||||||| ||||||||||||   |||||||| |||||||||    
T  16848380 agtgcagatttgacatccgatgtcggattgacctgaattatacattttcggaa 16848432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 27142768 - 27142618
Alignment:
Q  100 catttctattatttcaacaactttattatttttctggtttgtttcagtttgttatttt-cggtccattagagtttgttctttccctagtatttaaactaa 198  Q
    ||||| |||||||||| ||| ||||||||||||||| ||| ||||| |||||| |||| ||| | |||   ||||||| ||||||||||||||||||  |    
T  27142768 catttttattatttcagcaaatttattatttttctgttttatttcaatttgttgtttttcggcctatt---gtttgttatttccctagtatttaaacaga 27142672  T
Q  199 actttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||| |||||||    
T  27142671 actttcgtagcctaagaggcagtttttcattcaataaaattatcgaaaactttt 27142618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 8568886 - 8568741
Alignment:
Q  101 atttctattatttcaaca--actttattatttttctggttt--gtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaact 196  Q
    |||| |||||||||||||  |||| |||||||||||| |||  |||| |  |||||||| ||||  |||||||||||||| |||||||||||||||| ||    
T  8568886 atttttattatttcaacacaacttgattatttttctgtttttcgtttaatattgttattatcggctcattagagtttgttatttccctagtatttaagct 8568787  T
Q  197 aaactttcgtagcttaagaggcagttttgcattcaataaaaatatc 242  Q
    |||| |||||||| |||||| ||||||| |||||||||||| ||||    
T  8568786 aaacattcgtagcctaagagacagttttccattcaataaaattatc 8568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 27822344 - 27822304
Alignment:
Q  145 agtttgttattttcggtccattagagtttgttctttcccta 185  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  27822344 agtttgttatttttagtccattagagtttgttatttcccta 27822304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 18490301 - 18490455
Alignment:
Q  101 atttctattatttca--acaactttattatttttctggttt-gtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaacta 197  Q
    |||| ||||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||||| |||||||||||||| ||||| || |||||||||||    
T  18490301 atttttattatttcagcacaaatttattatttttctgtttttgattcaatttgttattttcggttcattagagtttgttttttccttaatatttaaacta 18490400  T
Q  198 aactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    ||| || ||||  ||||||  |||||| |||||||||||| ||||||||||||||    
T  18490401 aacattggtagtctaagagatagtttttcattcaataaaattatcgagaactttt 18490455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 54239422 - 54239554
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgttatttt-cggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggca 219  Q
    ||||||||||||||  ||| ||||| ||| ||||||| ||| ||||||||||||||| ||||| || ||||||||| ||||||| ||||| |||||  ||    
T  54239422 tttattatttttcttttttatttcaatttattatttttcggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataca 54239521  T
Q  220 gttttgcattcaataaaaatatcgagaactttt 252  Q
    ||||| || ||||||||| ||||||||||||||    
T  54239522 gtttttcaatcaataaaattatcgagaactttt 54239554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 28287567 - 28287646
Alignment:
Q  137 tttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagag 216  Q
    ||||||| ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||| ||||||    
T  28287567 tttgtttaagtttgttattttcggtccattaggatttgttatttccctagtatttaaactaaacattcgtagcctaagag 28287646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 252
Target Start/End: Original strand, 15634464 - 15634611
Alignment:
Q  109 tatttcaacaactttattatttttctggtttgtttcagtttgttatttt-cggtccattagagtttgtt-ctttccctagtatttaaactaaactttcgt 206  Q
    |||||||||| |||||||||||||||| ||| ||  ||||||||||||| | ||| ||| | |||||||  ||||||||||||||||||  |||||||||    
T  15634464 tatttcaacatctttattatttttctgttttattctagtttgttattttcctgtcaatttgggtttgttattttccctagtatttaaacataactttcgt 15634563  T
Q  207 agcttaagaggca--gttttgcattcaataaaaatatcgagaactttt 252  Q
    ||  |||||| ||   |||| ||||||||||||  |||||||| ||||    
T  15634564 agtctaagagacactttttttcattcaataaaataatcgagaaatttt 15634611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 34943699 - 34943596
Alignment:
Q  145 agtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaaaatatcga 244  Q
    |||||||||||||||| ||||| ||||||||| ||||| ||||||||||  ||||  |||||||| ||||||  | ||||  ||||||||||| ||| ||    
T  34943699 agtttgttattttcggcccatttgagtttgttatttccgtagtatttaagttaaatgttcgtagcctaagagaaaattttttattcaataaaattataga 34943600  T
Q  245 gaac 248  Q
    ||||    
T  34943599 gaac 34943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 34949261 - 34949198
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttcccta 185  Q
    |||||||||| | || |||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  34949261 tttattatttgtttgttttgtttcagtttgttattttcgg-ccattagggtttgttatttgccta 34949198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15634370 - 15634417
Alignment:
Q  6 agatttgacatccg-tgtcggattgactcaaattataccttttcggaa 52  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||    
T  15634370 agatttgacatctggtgtcggattgactcaaattatatcttttcggaa 15634417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 28287398 - 28287496
Alignment:
Q  2 gtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaaggggaattctctcacaagcataactcatcgttttgccatgatgtagg 99  Q
    |||||||||||| ||| | |||| |||||| || |||||||| ||||||||| | |||||  |||||||||||| ||||  ||||  ||||||||||||    
T  28287398 gtgcagatttgatatctggtgtctgattgattcgaattatacattttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtagg 28287496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 22486996 - 22486960
Alignment:
Q  137 tttgtttcagtttgttattttcggtccattagagttt 173  Q
    |||||||| |||||||||||||||| |||||||||||    
T  22486996 tttgtttctgtttgttattttcggttcattagagttt 22486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 32937055 - 32936906
Alignment:
Q  100 catttctattatttcaacaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaa 199  Q
    ||||| |||||||||| ||| ||||||||||||| | ||| ||| |||||||||||||||| ||||||   |||||| |||| |||||||||||||||||    
T  32937055 catttgtattatttcagcaaatttattatttttcggttttattttagtttgttattttcggcccattatgttttgttatttctctagtatttaaactaaa 32936956  T
Q  200 ctttcgtagcttaagaggcagttttgc--attcaataaaaatatcgagaa 247  Q
    ||||||| ||||  ||| || |||| |  ||||||||||| |||||||||    
T  32936955 ctttcgtggcttgggagacaatttttcatattcaataaaattatcgagaa 32936906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 32052834 - 32052951
Alignment:
Q  101 atttctattatttca--acaactttattatttttctggttt-gtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaacta 197  Q
    |||| ||||||||||  |||||||| ||||||||||| ||| ||||||||||||||| |||||  |||| | |||||||  ||||||||||||||| |||    
T  32052834 atttttattatttcagcacaactttgttatttttctgtttttgtttcagtttgttatattcggctcattggggtttgtt-attccctagtatttaagcta 32052932  T
Q  198 aactttcgtagcttaagag 216  Q
    | | ||| |||| ||||||    
T  32052933 accattcttagcctaagag 32052951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 4888915 - 4888871
Alignment:
Q  141 tttcagtttgttattttcggtccattagagtttgttctttcccta 185  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||    
T  4888915 tttcagtttgttatttttggaccattagagtttgttatttcccta 4888871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 32052716 - 32052771
Alignment:
Q  19 gtgtcggattgactcaaattataccttttcggaaggggaattctctcacaagcata 74  Q
    ||||| ||||||||| |||||||||||||||||| |||||||  ||||| ||||||    
T  32052716 gtgtccgattgactcgaattataccttttcggaaagggaatttgctcacgagcata 32052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 22572662 - 22572530
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgtta-ttttcggtccattagagtttgttctttcc-ctagtatttaaactaaactttcgtagcttaagaggc 218  Q
    |||||||||||| || ||| ||||||||||||| |||||||  |||  ||||||||| ||||| ||| ||||||||   |||||| ||||  ||||||||    
T  22572662 tttattatttttatgttttatttcagtttgttatttttcggctcatacgagtttgttatttcctctattatttaaatagaactttggtagtctaagaggc 22572563  T
Q  219 agttttgcattcaataaaaatatcgagaactttt 252  Q
    | |||| || | |||||||  |||||||||||||    
T  22572562 actttt-caataaataaaataatcgagaactttt 22572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 3778938 - 3778894
Alignment:
Q  141 tttcagtttgttattttcggtccattagagtttgttctttcccta 185  Q
    |||||||||||| |||| || ||||||||||||||| ||||||||    
T  3778938 tttcagtttgttgtttttggcccattagagtttgttatttcccta 3778894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 1151013 - 1151137
Alignment:
Q  116 acaactttattatttttctggtttgttt-cagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaag 214  Q
    ||||||||||||||||  |  ||||||| |||||||||||||||||  |||||| ||||||| ||||||| |||||||| |||||| |||||||| ||||    
T  1151013 acaactttattattttatttttttgttttcagtttgttattttcggctcattagggtttgttatttccctggtatttaagctaaacattcgtagcctaag 1151112  T
Q  215 aggcagttttgcattcaataaaaat 239  Q
    |  ||||||| ||||||||||||||    
T  1151113 aaacagtttttcattcaataaaaat 1151137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 33528421 - 33528308
Alignment:
Q  137 tttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaa 236  Q
    |||||||||||||||||||||| | ||||||| |||| || |||||||||||||||| |||||  || ||||  |||||| || |||| |||||||||||    
T  33528421 tttgtttcagtttgttattttcagcccattagggtttattatttccctagtatttaagctaaagatttgtaggctaagagacactttttcattcaataaa 33528322  T
Q  237 aatatcgagaactt 250  Q
    | ||| ||||||||    
T  33528321 attatagagaactt 33528308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1150860 - 1150920
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaaggggaatt 60  Q
    ||||||||||||||||||| | || |||||| || ||| |||||||||||||| |||||||    
T  1150860 agtgcagatttgacatccgatatccgattgattcgaatgataccttttcggaaagggaatt 1150920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 25340355 - 25340319
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgttatttt 157  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  25340355 tttattatttttctgttttatttcagtttgttatttt 25340319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 36844626 - 36844473
Alignment:
Q  99 gcatttctattatttcaacaactttattattttt-ctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaacta 197  Q
    |||||| |||||||| | ||| |||||||||||| ||| ||| ||| ||||   ||||||||| |||||||  ||| || ||||||||||||||||||||    
T  36844626 gcatttttattatttaagcaaatttattattttttctgttttattttagttcagtattttcggcccattaggatttattatttccctagtatttaaacta 36844527  T
Q  198 aactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaacttt 251  Q
    ||||||||| |  |||||||  ||||| |||| ||||||| |||||||||||||    
T  36844526 aactttcgtcgtctaagaggttgtttttcatttaataaaattatcgagaacttt 36844473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 35161023 - 35160869
Alignment:
Q  99 gcatttctattatttcaacaactttattatttttctggtttgtttcagtttgtta-ttttcggtccattagagtttgttctttccc-tagtatttaaact 196  Q
    |||||| ||||||||||  || ||  ||||||||||| ||||||| ||||||||| ||||||| | ||||| |||| || |||||| ||||||||||||     
T  35161023 gcatttttattatttcagtaaattatttatttttctgttttgtttaagtttgttatttttcggcctattagggttttttatttcccttagtatttaaaca 35160924  T
Q  197 aaactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
     |||||| ||||  |||||||| ||||| |||||||||||| ||||||||||||||    
T  35160923 gaactttggtagtctaagaggccgtttt-cattcaataaaattatcgagaactttt 35160869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 15385229 - 15385096
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgtta-ttttcggtccattagagtttgttctttccc-tagtatttaaactaaactttcgtagcttaagaggc 218  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||| || ||||||| |||||| |||||||||||   ||||||||| ||  |  || |    
T  15385229 tttattatttttctgttttatttcagtttgttatttttcgatccatgagggtttgttatttcccgtagtatttaaatagaactttcgtggcccataagac 15385130  T
Q  219 agttttgcattcaataaaaatatcgagaactttt 252  Q
    | |||| |||||||||||| ||||||||||||||    
T  15385129 attttttcattcaataaaattatcgagaactttt 15385096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 7775211 - 7775355
Alignment:
Q  101 atttctattatttcaaca--actttattatttttctggttt--gtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaact 196  Q
    |||| |||||||||||||  ||||||||||||||||  |||  |||| |  |||||||| ||||  |||||||||||||| ||||| || ||||||| ||    
T  7775211 atttttattatttcaacacaactttattatttttctatttttcgtttaatattgttattatcggctcattagagtttgttatttcctta-tatttaagct 7775309  T
Q  197 aaactttcgtagcttaagaggcagttttgcattcaataaaaatatc 242  Q
    |||| |||||||| |||||| || |||| |||||||||||| ||||    
T  7775310 aaacattcgtagcctaagagacatttttccattcaataaaattatc 7775355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 14503920 - 14504060
Alignment:
Q  109 tatttcaacaactttattatttttctggtttgtttcagtttgtta-ttttcggtccattagagtttgttcttt-ccctagtatttaaactaaactttcgt 206  Q
    ||||||||||  ||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||| ||| ||||| ||||||||    ||||||||    
T  14503920 tatttcaacacatttattatttttctgttttatttcagtttgttatttttcggcccattcgagtttgttatttcccctactatttaaagagtactttcgt 14504019  T
Q  207 agcttaagaggca-gttttgcattcaataaaaatatcgaga 246  Q
    | |  |||||  |  ||||||||||||||||| ||||||||    
T  14504020 aacccaagagaaattttttgcattcaataaaattatcgaga 14504060  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 249
Target Start/End: Original strand, 3273341 - 3273493
Alignment:
Q  99 gcatttctattatttca--acaactttattatttttctggtttgtttcagtttgttattttcggtccattagagtttgttctttccctagtatttaaact 196  Q
    |||||| ||||||||||  |||||||||||||||||    ||||||||| ||||||||||||||   ||||  ||||||| ||||| |||||||||||||    
T  3273341 gcatttttattatttcaccacaactttattattttttgcttttgtttcaatttgttattttcggcttattaaggtttgttatttccttagtatttaaact 3273440  T
Q  197 aaactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaact 249  Q
    |||| ||| |||| ||| |  ||||||| |||||||||||| |||||| ||||    
T  3273441 aaacattcatagcgtaatatccagtttttcattcaataaaattatcgaaaact 3273493  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5840764 - 5840854
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcggaaggggaattctctcacaagcataactcatcgttttgcca 90  Q
    |||||||||||| || ||| |||||||||||||| |||||||| ||||||||| |||||||| ||||| |||||||| ||||| |||||||    
T  5840764 agtgcagatttggcaaccggtgtcggattgactcgaattatacattttcggaaagggaattcgctcacgagcataacacatcgctttgcca 5840854  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 5841165 - 5841251
Alignment:
Q  165 ttagagtttgttctttccctagtatttaaactaaactttcgtagcttaagaggcagttttgcattcaataaaaatatcgagaactttt 252  Q
    |||| ||||||| |||||||||||||| |||||||| || ||||| |||||| |  |||| |||||||||||| ||||||||||||||    
T  5841165 ttagggtttgttgtttccctagtattttaactaaacatttgtagcctaagagactatttt-cattcaataaaattatcgagaactttt 5841251  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 5840913 - 5840981
Alignment:
Q  116 acaactttattatttttctggttt-gtttcagtttgttattttcggtccattagagtttgttctttccc 183  Q
    |||||||||||||||||  | ||| || ||||||||||||||||||| |||||| ||||||| ||||||    
T  5840913 acaactttattatttttaagtttttgtctcagtttgttattttcggtacattagggtttgttgtttccc 5840981  T

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Target: scaffold0251 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 8431 - 8298
Alignment:
Q  121 tttattatttttctggtttgtttcagtttgtta-ttttcggtccattagagtttgttcttt-ccctagtatttaaactaaactttcgtagcttaagaggc 218  Q
    ||||||||||||||  ||| ||||||||||||| ||||||| ||||| | ||||||| ||| |||| || |||||||  |||||||||||| |||||| |    
T  8431 tttattatttttctattttatttcagtttgttatttttcggcccattcgggtttgttatttcccctggtgtttaaacagaactttcgtagcctaagagac 8332  T
Q  219 agttttgcattcaataaaaatatcgagaactttt 252  Q
    | |||| |||||||| ||| | |||||| |||||    
T  8331 actttttcattcaatcaaattttcgagatctttt 8298  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 29035 - 28895
Alignment:
Q  99 gcatttctattatttcaacaactttattatttttctggtttgtttcagtttgttatttt---cggtccattagagtttgttctttccctagtatttaaac 195  Q
    |||||| || ||||| | ||| ||||||||||||||| ||| ||||||||| || ||||   | |   ||||| ||||||| ||||||||||||||||||    
T  29035 gcatttttaatatttaagcaagtttattatttttctgttttatttcagtttatttttttttccagcgaattagggtttgttatttccctagtatttaaac 28936  T
Q  196 taaactttcgtagcttaagaggcagttttgcattcaataaaa 237  Q
      |||||| ||||||||||| | |||||| |||| |||||||    
T  28935 ataactttggtagcttaaga-gtagtttttcattgaataaaa 28895  T

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Target: scaffold0154; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29108 - 29059
Alignment:
Q  1 agtgcagatttgacatccg-tgtcggattgactcaaattataccttttcg 49  Q
    ||||||||||||||||||| ||| ||||| |||| |||||||||||||||    
T  29108 agtgcagatttgacatccggtgttggattaactcgaattataccttttcg 29059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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