View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20451_low_1 (Length: 436)
Name: NF20451_low_1
Description: NF20451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20451_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 46997605 - 46997196
Alignment:
| Q |
17 |
cagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46997605 |
cagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaattatgatgataaagt |
46997506 |
T |
|
| Q |
117 |
ggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46997505 |
ggtgcgaaactcggttgaagagtggttacgttcgccttttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgagg |
46997406 |
T |
|
| Q |
217 |
tttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46997405 |
tttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtc |
46997306 |
T |
|
| Q |
317 |
aagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagagttcatgaattcggcgtcggtgtg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46997305 |
aagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagagttcatgaattcggcgtcggtgtg |
46997206 |
T |
|
| Q |
417 |
tagtcctttg |
426 |
Q |
| |
|
|||||||||| |
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|
| T |
46997205 |
tagtcctttg |
46997196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 46974540 - 46974162
Alignment:
| Q |
19 |
gtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtgg |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||| ||| ||| ||||||||||||||| |
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|
| T |
46974540 |
gtgagtgctgaaacgacggtaggggaattgctggagaatgatctaggatgggcagcatggaaaattcatctagctgttgtaaatcatgatgataaagtgg |
46974441 |
T |
|
| Q |
119 |
tgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggtt |
218 |
Q |
| |
|
|||| | ||||||||||||||||| ||||| || ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46974440 |
tgcgtaggtcggttgaagagtggtttcgttctccttttgtgtatcgaacagatttgttttttgatccttacactgtgatgatgggtagttcaccgaggtt |
46974341 |
T |
|
| Q |
219 |
taatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtcaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
46974340 |
taatatgtatgggaatgaatttggaatgggaaaagttttggcagttagaagtggatatgctaataaatttgatggaaaagtaacttcatatccaggtcaa |
46974241 |
T |
|
| Q |
319 |
gaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagagttca |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||||||| |
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|
| T |
46974240 |
gaaggaggaggaagcattgatcttgaagtgtgtctttcgccggagaaaatgatggcgctggaagcagatgaagagttca |
46974162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 46980530 - 46980144
Alignment:
| Q |
18 |
agtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtg |
117 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||| |
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|
| T |
46980530 |
agtgagtgctgaaacgacggtaggagagttgctggagaatgatctaggatgggcagcatggaaaattcatgtggctattgcaaatcacgatgataaagtg |
46980431 |
T |
|
| Q |
118 |
gtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggt |
217 |
Q |
| |
|
||||| | ||||||||| ||||||| ||||| || ||| |||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
46980430 |
gtgcgtaggtcggttgaaaagtggtttcgttctccttttttgtatcgaatggatttgttctttgatccttatactgtgatgataagtggttcaccgaggt |
46980331 |
T |
|
| Q |
218 |
ttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtca |
317 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
46980330 |
ttaatacgtatggaaatgaattcggaatgggaaaagctttggcagttagaagtggatatgctaacaaatttgatggaaaagtaatttcatatccaggtca |
46980231 |
T |
|
| Q |
318 |
agaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagagttcatgaattc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
46980230 |
agaaggaggagggagcattgatcttgaagtgtgtctttcacctaagaaaatgatggtgctggaaacaaatgaagagttcatgaattc |
46980144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 334
Target Start/End: Complemental strand, 47001260 - 47000951
Alignment:
| Q |
25 |
gctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagtggtgcgaa |
124 |
Q |
| |
|
||||||||||| |||||||| ||| | |||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || |
|
|
| T |
47001260 |
gctgaaacaacagtaggggagttgttcaggaatgatttaggatgggcagcatggaagattcatctggctattgcgaatcatgatgataaagtggtgcaaa |
47001161 |
T |
|
| Q |
125 |
actcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgaggtttaatat |
224 |
Q |
| |
|
| | |||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
47001160 |
attatgttgaagagtggatacgttctcctattgtgtatcgaatggatctgttctttgatccttatactgtgatgatgggtagctcaccaaggtttaatat |
47001061 |
T |
|
| Q |
225 |
gtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtcaagaagga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47001060 |
gtatgggaatgaatttggaatgggaaaagcattggcagttagaagttgatatgctaacaaatttgatggaaaagtaacttcatatccaggtcaaaaagga |
47000961 |
T |
|
| Q |
325 |
ggagggagca |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
47000960 |
ggagggagca |
47000951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 46995345 - 46994958
Alignment:
| Q |
17 |
cagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaactatgatgataaagt |
116 |
Q |
| |
|
||||||| |||||||||| ||| || |||||||| |||| ||||||| |||| ||||||||||||| || ||||||||||| |||||| | | ||| |
|
|
| T |
46995345 |
cagtgagcactgaaacaacaaaaggtgagttgctggagaatggactaggattggcatcatggaagattcatctagctattgcaaaatatgatcacagagt |
46995246 |
T |
|
| Q |
117 |
ggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactgtgatgatgggtagttcaccgagg |
216 |
Q |
| |
|
|||||| | | || ||||||||||| || || || | ||| ||||||||| |||| |||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
46995245 |
tgtgcgacaattagtggaagagtggttgcggtctcctatagtggttcgaatggacatgttggttgatccttactctgtgatgatgggtagttcaccaagg |
46995146 |
T |
|
| Q |
217 |
tttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaacttcatatccaggtc |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
46995145 |
tttaatatgtatgggagtgaatttggaatgggaaaagctttgggagttagaagtggatatgctaacaagtttgatggaaaagtaacatcatatccaggtc |
46995046 |
T |
|
| Q |
317 |
aagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagagttcatgaattc |
404 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || |||||||||| | | || ||||| ||| |||||||||||||||| |
|
|
| T |
46995045 |
aagaaggaggagggagcgttgatcttgaagtgtgtctttcgccggagaaaatgacgttgctagaaaccgatgaagagttcatgaattc |
46994958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 46955243 - 46955155
Alignment:
| Q |
205 |
agttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
293 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||| |
|
|
| T |
46955243 |
agttcaccaaggttcaatatgtatggaaatgaatttggaatgggaaaagcggttgcagttctaagtggatatgcaaacaaatttgatgg |
46955155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 46950915 - 46950785
Alignment:
| Q |
205 |
agttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaactt |
304 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| || || || |
|
|
| T |
46950915 |
agttcaccaaggtttaatatgtatggaaatgaatttggaatgggaaaaccagtggcagttttgagtggttatgcaaacaaatgtgatgggaatgtgacag |
46950816 |
T |
|
| Q |
305 |
catatccaggtcaagaaggaggagggagcat |
335 |
Q |
| |
|
||||| || || ||||||||||||||||| |
|
|
| T |
46950815 |
catatgagggacatgaaggaggagggagcat |
46950785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 46958097 - 46957991
Alignment:
| Q |
204 |
tagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaact |
303 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| || ||| | |
|
|
| T |
46958097 |
tagttcgccaaggttcaatatgtatgggaatgaatttggaatgggtaaagcgatggcagttctgagtggatatgcaaacaaatttgatggtaatgtatca |
46957998 |
T |
|
| Q |
304 |
tcatatc |
310 |
Q |
| |
|
||||||| |
|
|
| T |
46957997 |
tcatatc |
46957991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 46951091 - 46951039
Alignment:
| Q |
29 |
aaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaag |
81 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
46951091 |
aaacaaccgtaggtgaattgctagaaaatgatttgggatgggcagcatggaag |
46951039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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