View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20451_low_5 (Length: 274)
Name: NF20451_low_5
Description: NF20451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20451_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 7655810 - 7655569
Alignment:
| Q |
14 |
agagggtactgtaagtaatagtgtttaaaggtaaagattaatggttaccattccaccagtagcagacttgagaagaatacaagcaacaactgaaccaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7655810 |
agagggtactgtaagtaatagtgtttaaaggtaaagattaatggttaccattccaccagtagcagacttgagaagaatacaagcaacaactgaaccaagt |
7655711 |
T |
|
| Q |
114 |
aactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7655710 |
aactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagatatgt |
7655611 |
T |
|
| Q |
214 |
ttgctccaacagaaacagcaacaaatagtccaaatgcatgag |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7655610 |
ttgctccaacagaaacggcaacaaatagtccaaatgcatgag |
7655569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
153 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
238 |
Q |
| |
|
||||| || |||| ||||||||| || ||||| || ||||| ||||||||||| |||||||| || ||||| || ||||||||||| |
|
|
| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 52102949 - 52103147
Alignment:
| Q |
57 |
gttaccattccaccagtagca-gacttgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatg |
155 |
Q |
| |
|
|||||||||||| |||| ||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
52102949 |
gttaccattccagcagt-gcatgaattgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatg |
52103047 |
T |
|
| Q |
156 |
tttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgag |
255 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
52103048 |
tttcctccaatgaaagcaccaaatgtgactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgag |
52103147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 23339615 - 23339455
Alignment:
| Q |
93 |
caagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggt |
192 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||| |||| | ||| | |||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
23339615 |
caagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggt |
23339516 |
T |
|
| Q |
193 |
tcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatg |
253 |
Q |
| |
|
| |||||||||||||| ||||| || |||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
23339515 |
tgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatg |
23339455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
189 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
238 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
174 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
247 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||||| ||||| || ||||| | |||||||||||| ||| |||| |
|
|
| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University