View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20451_low_7 (Length: 235)
Name: NF20451_low_7
Description: NF20451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20451_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 11558149 - 11558329
Alignment:
| Q |
24 |
gttactgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttt |
123 |
Q |
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| T |
11558149 |
gttactgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttt |
11558248 |
T |
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| Q |
124 |
tataattgagagtaaattgtggttttggtccttggatatgtcaaacgttatctatatatagtctctgaattaaccaaaatt |
204 |
Q |
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| T |
11558249 |
tataattgagagtaaattgtggttttggtccttggatatgtcaaacgttatctatatatagtctctgaattaaccaaaatt |
11558329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 11544733 - 11544903
Alignment:
| Q |
24 |
gttactgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttt |
123 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |
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| T |
11544733 |
gttactgcggctaccaccctttggctccctctgcctgctctgaaagtttttgaattcctcaaagatcctacaaagcgatcacaggtaacatcttttgctt |
11544832 |
T |
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| Q |
124 |
tataattgagagtaaattgtggttttggtccttggatatgtcaaacgttatctatatatagtctctgaattaa |
196 |
Q |
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| T |
11544833 |
tataattgagagtaaactgtagctttggtccttgaatatgtcaaacgttatc--tatatagtctctgaattaa |
11544903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 12064273 - 12064193
Alignment:
| Q |
27 |
actgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacag |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12064273 |
actgctgctaccactctttggctccctctgcctgctcagaaagtttttgaattgctcaaagatcctacaaaacgatcacag |
12064193 |
T |
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