View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20452_high_1 (Length: 746)
Name: NF20452_high_1
Description: NF20452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20452_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 234 - 739
Target Start/End: Complemental strand, 38951840 - 38951334
Alignment:
| Q |
234 |
agagcatatgtgtaacacacaaggcttccatagccatgcaagctgaagaatgtctaatgctcagcaccccacctgctttaacgtgtccattcatcaccat |
333 |
Q |
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| T |
38951840 |
agagcatatgtgtaacacacaaggcttccatagccatgcaagctgaagaatgtctaatgctcagcaccccacctgctttaacgtgtccattcatcaccat |
38951741 |
T |
|
| Q |
334 |
tctcacttccct-ataaattaccagttctcattgaggttctcctcatcacaaacaacagtcctccaatatctgtcatcatggctaagcttcttgcactct |
432 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38951740 |
tctcacttcccttataaattaccagttctcattgaggttctcctcatcacaaacaacagtcctccaatatctgtcatcatggctaagcttcttgcactct |
38951641 |
T |
|
| Q |
433 |
ctctttcactttgttttctacttttcagtggctgttttgctatcagagagcatcagcctcatcaaaagcagcagcctcaacaaaatgagtgtcagctaga |
532 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38951640 |
ctctttcactttgttttctacttttcagtggctgttttgctattagagagcatcagcctcatcaaaagcagcagcctcaacaaaatgagtgtcagctaga |
38951541 |
T |
|
| Q |
533 |
gcagctgaatgcactcgaacctgataaccgcatagagtctgaaggtggcattattgagacttggaatccaaacaacaggcaattcagatgtgctggtgtg |
632 |
Q |
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| T |
38951540 |
gcagctgaatgcactcgaacctgataaccgcatagagtctgaaggtggcattattgagacttggaatccaaacaacaggcaattcagatgtgctggtgtg |
38951441 |
T |
|
| Q |
633 |
gccctctctcgttgtacccttcaacgcaattctctccgcagaccattctactccaatgctcctcaagaaattttcatccaacaaggtcagtcactttgat |
732 |
Q |
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| T |
38951440 |
gccctctctcgttgtacccttcaacgcaattctctccgcagaccattctactccaatgctcctcaagaaattttcatccaacaaggtcagtcactttgat |
38951341 |
T |
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| Q |
733 |
attcttc |
739 |
Q |
| |
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||||||| |
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| T |
38951340 |
attcttc |
38951334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 408 - 735
Target Start/End: Complemental strand, 38944166 - 38943848
Alignment:
| Q |
408 |
atcatggctaagcttcttgcactctctctttcactttgttttctacttttcagtggctgttttgctatcagagagcatcagcctcatcaaaagcagcagc |
507 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944166 |
atcatggctaagcttcttgcactctctcttt---------ttctacttttaagtagctgttttgctatcagagagcatcagcctcatcaaaagcagcagc |
38944076 |
T |
|
| Q |
508 |
ctcaacaaaatgagtgtcagctagagcagctgaatgcactcgaacctgataaccgcatagagtctgaaggtggcattattgagacttggaatccaaacaa |
607 |
Q |
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| T |
38944075 |
ctcaacaaaatgaatgccagctagagcagctgaatgcccttgaacctgataaccgtatagagtcagaaggtggcattattgagacttggaatccaaacaa |
38943976 |
T |
|
| Q |
608 |
caggcaattcagatgtgctggtgtggccctctctcgttgtacccttcaacgcaattctctccgcagaccattctactccaatgctcctcaagaaattttc |
707 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38943975 |
caggcaattcagatgtgcaggtgtggccctctctcgttgtacccttcaacgcaattctctccgcagaccatcctactccaatgctcctcaagaaattttc |
38943876 |
T |
|
| Q |
708 |
atccaacaaggtcagtcactttgatatt |
735 |
Q |
| |
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|||||||||||||||| ||||||||||| |
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| T |
38943875 |
atccaacaaggtcagttactttgatatt |
38943848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 38952057 - 38951865
Alignment:
| Q |
43 |
cagagaccgtgattgttaaatgaagtagctaattgaaaatctttcttcatgaatcttt-gcatgctgtgcataatttataaggaagaagcgtggacgaca |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38952057 |
cagagaccgtgattgttaaatgaagtagctaattgaaaatctttcttcatgaatcttttgcatgctgtgcataatttataaggaagaagcgtggacgaca |
38951958 |
T |
|
| Q |
142 |
agaaataaagccatggtcccctcaccactgattccagctaatagcacgtaggcaagaattgcaatgcagacaatcatgctctttgtttggtta |
234 |
Q |
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| T |
38951957 |
agaaataaagccatggtcccctcaccactgattccagctaatagcacgtaggcaagaattgcaatgcagacaatcatgctctttgtttggtta |
38951865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 38944337 - 38944291
Alignment:
| Q |
251 |
cacaaggcttccatagccatgcaagctgaagaatgtctaatgctcag |
297 |
Q |
| |
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|||| ||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
38944337 |
cacatggctttcatagccatgcacgatgaagaatgtctaatgctcag |
38944291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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