View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20452_high_2 (Length: 355)
Name: NF20452_high_2
Description: NF20452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20452_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 22963083 - 22962820
Alignment:
| Q |
19 |
caacgtactttaaaggtaagccattttttatcctcttcaaattttcttctttactaattgttgacaatattgtgtcccattttaacaacatagtttattt |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22963083 |
caacgtactttaaaggtaagccattttttattctcttcaaattttcttctttactaattgttgacaatattgtgtcccattttaacaacatagtttattt |
22962984 |
T |
|
| Q |
119 |
actttgttcattacagtgaaattgggttgttttgaggattctgattgcccatatgatatgtgttatggtggttttcaaccaaggtgtgtgaatggtttgt |
218 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |
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| T |
22962983 |
actttgttcattacagtaaaattgagttgttttgaggattctgattgcccatatgatatgtgttatgctggttttcaaccaaagtgtgtgaatggttggt |
22962884 |
T |
|
| Q |
219 |
gtgactgttagagaattcagccatgaattcaatgagtagcaacttaagagagtacacactgcca |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22962883 |
gtgactgttagagaattcagccatgaattcaatgagtagcaacttaagagagtacacactgcca |
22962820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 22998394 - 22998634
Alignment:
| Q |
19 |
caacgtactttaaaggtaagccattttttatcctcttcaaattttcttctttactaattgttgacaatattgtgtcccattttaacaacatagtttattt |
118 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22998394 |
caacgtactttaaaggtaagccgttttttattctcttcaaattttcttctttactaattgttgacaatattgtgtcccattttaacaacatagtttattt |
22998493 |
T |
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| Q |
119 |
actttgttcattacagtgaaattgggttgttttgaggattctgattgcccatatgatatgtgttatggtggttttcaaccaaggtgtgtgaatggtttgt |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |
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| T |
22998494 |
actttgttcattacagtgaaattgagttgttttgaggattctgattgcccatatgatatgtgttatgctggttttcaaccaaagtgtgtgaatggttggt |
22998593 |
T |
|
| Q |
219 |
gtgactgttagagaattcagccatgaattcaatgagtagca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22998594 |
gtgactgttagagaattcagccatgaattcaatgagtagca |
22998634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 22519867 - 22520178
Alignment:
| Q |
19 |
caacgtactttaaaggtaagccattttttatcctcttcaaattttcttctttactaattgttgacaatattgtgtcccattttaacaacatagtttattt |
118 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
22519867 |
caacgtactttgaaagtaagccattttttatccttttcaaattttcttctttactagttgtagataatattgtgtcccattttaacaacatagtttattt |
22519966 |
T |
|
| Q |
119 |
actttgttcattacagtgaaattgggttgttttgaggattctgattgcccatatgatatgtgttatggtggttttcaaccaaggtgtgtgaatggtttgt |
218 |
Q |
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||||| |||||||||| |||||| |||| |||| |||||||||||||||||||||||||| || |||| ||| |||||||||| ||||||||| || |
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| T |
22519967 |
acttt-ttcattacagcaaaattgaattgtattgatgattctgattgcccatatgatatgtgcgatcctggtcttctaccaaggtgtttgaatggttggt |
22520065 |
T |
|
| Q |
219 |
gtgactgttagagaattcag-------ccatgaattcaatgagtagcaacttaagagagtacacactgccaaactagaatatttgtc-ttttgttatttt |
310 |
Q |
| |
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||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||||| |||| |||| |||||||||||||| | ||| |||||||| |
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| T |
22520066 |
gtgactgttctagatttcagccatggcccatggattcaatgagtagcaacctaagagagttcacattgcctaactagaatatttgacatttagttatttt |
22520165 |
T |
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| Q |
311 |
gtttgcgcccaat |
323 |
Q |
| |
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|||| |||||||| |
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|
| T |
22520166 |
gtttacgcccaat |
22520178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 11860882 - 11860924
Alignment:
| Q |
33 |
ggtaagccattttttatcctcttcaaattttcttctttactaa |
75 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11860882 |
ggtaagccattttttatccttttcaaattttcttctttactaa |
11860924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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