View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20452_low_3 (Length: 290)
Name: NF20452_low_3
Description: NF20452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20452_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 10797568 - 10797318
Alignment:
| Q |
18 |
tatggcttccttctccaacatttcaacacacttgttcactcatcacactcacactcaaaccaaattctaccactacagccattcttctttaccaagctac |
117 |
Q |
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| T |
10797568 |
tatggcttctttctccaacatttcaacacacttgttcactcatcacactcacactcaaaccaaattctaccactacagccattcttctttaccaagctac |
10797469 |
T |
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| Q |
118 |
atcatcacagcccgccatgaagttttcacactcttctcttccaagctcaatcattcatctgcctcttcacccattttcatgccaaatcatttgattcatt |
217 |
Q |
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| T |
10797468 |
atcatcacagcccgccatgaagttttcacactcttctcttccaagctcaatcattcctctgcctctgcacccattttcatgccaaatcatttgattcatt |
10797369 |
T |
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| Q |
218 |
caccggtttccacttctttctcagctggaaatggaggcggctttccaggga |
268 |
Q |
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| T |
10797368 |
ctccggtttccacttctttctcagctggaaatggaggcggctttccaggga |
10797318 |
T |
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