View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20453_low_3 (Length: 708)
Name: NF20453_low_3
Description: NF20453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20453_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 48393109 - 48393225
Alignment:
| Q |
110 |
tatttgtgttttctccaaatgtttgcttaattcatatgaatatttacgttaaaatgctattttgtgttattgaagcataagttaaaaaatcaaatatgaa |
209 |
Q |
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| T |
48393109 |
tatttgtgttttctccaaatttttgcttaattcatatgaatatttacgttaaaatgctattttgtgttatagaagcataagttaaaaaatcaaatatgaa |
48393208 |
T |
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| Q |
210 |
agttctttttaaaagtt |
226 |
Q |
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| T |
48393209 |
agttgtttttaaaagtt |
48393225 |
T |
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Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 48393041 - 48393140
Alignment:
| Q |
10 |
agaagcatagggcaattataatttgcaaatattaggatgcttcaaattagttttagtatataatggtatatttgtgttttctccaaatttttgcttaatt |
109 |
Q |
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|||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393041 |
agaaacatagggcaattataatttgtaaatactaggatgcttcaaatttgttttagtatataatggtatatttgtgttttctccaaatttttgcttaatt |
48393140 |
T |
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