View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20453_low_4 (Length: 597)
Name: NF20453_low_4
Description: NF20453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20453_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 406
Target Start/End: Original strand, 23429366 - 23429767
Alignment:
| Q |
6 |
atgaagtactagccaaatgatatttttgcttaataataagtgagaaaatctcacaaattgaaggcaaatgtttcatgagtaagatttgagatctggctat |
105 |
Q |
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| T |
23429366 |
atgaagtactggccaaatgatctttttgcttaataataagggagaaaatctcacaaattgaaggcaaaggtttcatgagcaagatttgagatctggctat |
23429465 |
T |
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| Q |
106 |
gctataatcatcatataaccctttcaaaaaacggatgtcatactcaatcttgcattggttgtgcataattctaaatgcatcacaattacatctaacattg |
205 |
Q |
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| T |
23429466 |
gctataatcaacatataaccctttcagaaaacggatgacatactcaatctcgcattggttgcgcataattctaaaggcatcacaattgcatctaacattg |
23429565 |
T |
|
| Q |
206 |
catgaacatatagggattgaacgcaaatcctctaaattttcacaaacaa-ttttgtgtcggtgaaaaactcattaacatatcattctccttgtttcatgg |
304 |
Q |
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| T |
23429566 |
caagattggatagggattgaacgcaaattctctaaattttcacaaacaatttttgtgtcggtgaaaaactcattaacatatcattctccttgtttcatgg |
23429665 |
T |
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| Q |
305 |
agtgannnnnnnnaaggagatcaaaacgtttgaaatgagtacatttagtgaattggtgacacagtttgtcccacaaaactttagcattgtcaatgcacac |
404 |
Q |
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| T |
23429666 |
agtgaatttcttgaaggagatcaaaaagtttgaaatgagtaaatttggtaaattggtgacacaggttgtcccacaaaactttagcattgtcaatgtacac |
23429765 |
T |
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| Q |
405 |
ga |
406 |
Q |
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| T |
23429766 |
ga |
23429767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 407 - 570
Target Start/End: Original strand, 23429894 - 23430057
Alignment:
| Q |
407 |
tctttgatatgaggaacatttcatattgcggctcaatgaatggtaatttgtgttatttaattaaggtgaaaccaaaacgtagcctatactttagcaggat |
506 |
Q |
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| T |
23429894 |
tctttgatatgaggaacatttcatattgcggctccatgaatggtaatttgtgttatttaattaaggtgaaaccaaaacttggcctatatttcagcaggat |
23429993 |
T |
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| Q |
507 |
gaagataacatggagattgagtaaaatcattgacaggtgggtttcgaagtggagaagtcagaat |
570 |
Q |
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| T |
23429994 |
gaagataacatggagattgagtaaaatcattgacaggttggtttcaaagtggagaagtcagaat |
23430057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 579
Target Start/End: Original strand, 550461 - 550538
Alignment:
| Q |
502 |
aggatgaagataacatggagattgagtaaaatcattgacaggtgggtttcgaagtggagaagtcagaatcagtgatga |
579 |
Q |
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| T |
550461 |
aggatgaagataatatggagatagagtaaaataattgacatgttagttttgaagtgaagaagtaggaatcagtgatga |
550538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 563
Target Start/End: Original strand, 23437779 - 23437893
Alignment:
| Q |
450 |
taatttgtgttatttaattaaggtgaaaccaaaacgtagcctatacttt-agcaggatgaagataacatggagattgagtaaaatcattgacaggtgggt |
548 |
Q |
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|||||||| ||||| | || |||||||| |||| | |||||| | ||| || ||||||||||||| |||||||||||||||||||||| | || ||| |
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| T |
23437779 |
taatttgttttattcagttgaggtgaaatcaaatcagagcctagattttcagtaggatgaagataattaggagattgagtaaaatcattgatatgttggt |
23437878 |
T |
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| Q |
549 |
ttcgaagtggagaag |
563 |
Q |
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| T |
23437879 |
ttcgaagcggagaag |
23437893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 425 - 579
Target Start/End: Complemental strand, 3811656 - 3811501
Alignment:
| Q |
425 |
tttcatattgcggctcaatgaatggtaatttgtgttatttaattaaggtgaaaccaaaacgtagcctatacttt-agcaggatgaagataacatggagat |
523 |
Q |
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|||||| ||||||||| ||||||||||||| ||||||||||||| || ||||| |||||| ||||| | | | | |||||||||||||| |||||||| |
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| T |
3811656 |
tttcatgttgcggctccatgaatggtaattggtgttatttaattgagatgaaatcaaaacagagcctggattctcaccaggatgaagataatatggagat |
3811557 |
T |
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| Q |
524 |
tgagtaaaatcattgacaggtgggtttcgaagtggagaagtcagaatcagtgatga |
579 |
Q |
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|| |||||||||||||||||| || || |||||||||||||| ||||| ||||||| |
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| T |
3811556 |
tgggtaaaatcattgacaggttgggttggaagtggagaagtcggaatcggtgatga |
3811501 |
T |
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