View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20453_low_5 (Length: 365)
Name: NF20453_low_5
Description: NF20453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20453_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 31976766 - 31977088
Alignment:
| Q |
18 |
cagctattacgatttgggagaccaaaatattgatttaagcaactcttattgttgagtgacaaacacatcctccatatttcagaaaagaacaaatagttga |
117 |
Q |
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| T |
31976766 |
cagctattacgatttgggagaccaaaatattgatttaagcaactcttattgttgagtgacaaacacatcctccaaatttcagaaaagaacaaatagttaa |
31976865 |
T |
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| Q |
118 |
tgattatatcaaaagtttcggtcaaaatataagaaaataattttcctacaacagcacgtttacgaaatttcatgtaataattgatcttcatcgttgattt |
217 |
Q |
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| T |
31976866 |
tgattatttcaaaagtttcggtcaaaatataagaaaataattttcctacaaccgcacgtttacgaaatttcatgtaataattgatcttcatcgttgattt |
31976965 |
T |
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| Q |
218 |
gagatcggataatttagatcaaacaatcaatttcatgttgttaaatgatctcgttatcgttgatttacatcgaatggccaatctagatcaaacaataagt |
317 |
Q |
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| T |
31976966 |
gagatcggacaatttagatcaaacaatcaattttatgttgttaaatgatctcg-----------ttacatcgaatgaccaatctagatcaaacaatcagt |
31977054 |
T |
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| Q |
318 |
ttcatgttgttaaatgatctcgctgtccttgatt |
351 |
Q |
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| T |
31977055 |
ttcatgttgttaaacgatctggttgtcgttgatt |
31977088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 31977038 - 31977097
Alignment:
| Q |
232 |
tagatcaaacaatcaatttcatgttgttaaatgatctcgttatcgttgatttacatcgaa |
291 |
Q |
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| T |
31977038 |
tagatcaaacaatcagtttcatgttgttaaacgatctggttgtcgttgattgacatcgaa |
31977097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 23306366 - 23306309
Alignment:
| Q |
211 |
ttgatttgagatcggataatttagatcaaacaatcaatttcatgttgttaaatgatct |
268 |
Q |
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| T |
23306366 |
ttgatttgagattggatgatctaaatcaaacaaacaatttcatgcagttaaatgatct |
23306309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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