View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20454_high_1 (Length: 215)
Name: NF20454_high_1
Description: NF20454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20454_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 51937440 - 51937619
Alignment:
| Q |
17 |
agaacgtgcacctcgaagttctaagcagaattttaattgttgcattcttagctttggaaatcttgttgttcgaaagttgaaaatggtatgtattattgtt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51937440 |
agaacgtgcaccttgaagttctaagcagaattttaattgttgcattcttagctttggaaatcttgttgttccaaagttgaaaatggtatgtattattgtt |
51937539 |
T |
|
| Q |
117 |
tttatatctgttataaatctgaaaaatgtatctgtggatttttaatcgaaaaatgtatatgtgggtttgtgtgtctcaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51937540 |
tttatatctgttataaatctgaaaaatgtatctgtggatttttaatcgaaaaatgtatatgtgggtttgtgtgtctcaaa |
51937619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University