View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20454_high_10 (Length: 334)
Name: NF20454_high_10
Description: NF20454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20454_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 23207742 - 23208065
Alignment:
| Q |
1 |
tttccctccctcaatattagaaagatctttcaattacactccctttagccttcattacattcagctactactactacttaaaaagccattgcttccaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23207742 |
tttccctccctcaatattagaaagatctttcaattacactccctttagccttcattacattcagctac---tactacttaaaaagccattgcttccaaca |
23207838 |
T |
|
| Q |
101 |
ataactcattctctcaatatctacaaaccaaacaaatcaatcaacttaacttcaattcaacttatatccatgaaaggaatggacatgttttgttcttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23207839 |
ataactcattctctcaatatctacaaaccaaacaaatcaatcaacttaacttcaattcaacttatatccatgaaaggaatggacatgttttgttcttctc |
23207938 |
T |
|
| Q |
201 |
cttcttcaacagcaataatacatagtagtatagatcaacgttctatactaagaagaagtagaaccaccaaaaactatgatcatgaaagaaggaaaaatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23207939 |
cttcttcaacagcaataatacatagtagtatagatcaacgttctatactaagaagaagtagaaccaccaaaaactatgatcatgaaagaaggaaaaatca |
23208038 |
T |
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| Q |
301 |
acttcatcatgttccttgttcatctca |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23208039 |
acttcatcatgttccttgttcatctca |
23208065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 27458260 - 27458116
Alignment:
| Q |
122 |
tacaaaccaaacaaatcaatcaacttaacttcaattcaacttatatccatgaaaggaatggacatgttttgttcttctccttcttcaacagcaataatac |
221 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||| |
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| T |
27458260 |
tacaaaccaaacaaattaaacaacttaacttcaattcaacttatatccatgaaaagaatggacatgttctgttcttcccctgcttcaacagcaataatac |
27458161 |
T |
|
| Q |
222 |
atagtagtatagatcaacgttctatactaagaagaagtagaacca |
266 |
Q |
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|||||||||||||||||||||||||| || |||||| ||||||| |
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| T |
27458160 |
atagtagtatagatcaacgttctatattacaaagaagcagaacca |
27458116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27458344 - 27458273
Alignment:
| Q |
1 |
tttccctccctcaatattagaaagatctttcaattacactccctttagccttcattacattcagctactact |
72 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27458344 |
tttccctctctcaatattagaaagatcttacaattacactccctttagccttcattaccttcagctactact |
27458273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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