View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20454_high_12 (Length: 327)
Name: NF20454_high_12
Description: NF20454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20454_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 51238266 - 51238496
Alignment:
| Q |
1 |
gtttcaacctccttgcttgcacaccatggaagatgtgatttggagtgaaatttataataactagttttcagatgagtttgtttaatgttgctataagtgg |
100 |
Q |
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| T |
51238266 |
gtttcagcctccttgcttgcacaccatggaagatgtgatttggagtgaaatttataataactagttttcagatgagtttgtttaatgttgctataagtgg |
51238365 |
T |
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| Q |
101 |
tccttccannnnnnncaatta-tttatgtgaatgtcttcgtgtgtttatcatgttttgtttattattattatcaaagttacaaaattaagctcttatcat |
199 |
Q |
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|||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
51238366 |
tccttccatttttttcaattattttatgtgaatgtcttagtgtgtttatcatgttttgt---ttattattatcaaa---------------tattatcat |
51238447 |
T |
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| Q |
200 |
atagacagaggcaaacaccttattgacaaacgaggtgtcaattctgtat |
248 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51238448 |
agagacggaggcaaacaccttattgacaaacgaggtgtcaattctgtat |
51238496 |
T |
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