View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20454_high_14 (Length: 319)
Name: NF20454_high_14
Description: NF20454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20454_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 47011031 - 47011336
Alignment:
| Q |
1 |
aatcacaatattcaataacagaattattaaacattcactaactactcnnnnnnnnnnnnntaaccatatcaaagatgagcaaatcacccattcacctcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| |
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| T |
47011031 |
aatcacaatattcaataacagaattattaaacattcactaactactcaaa-----------aaaaataaaaaaaatgagcaaatcacccattcacctcct |
47011119 |
T |
|
| Q |
101 |
gaatttgtaggggtcggaaatttatacccctgaaatttgcagatacgcnnnnnnnnnnntc---cagaaactacttttgtttgattgtaagctagtttga |
197 |
Q |
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| T |
47011120 |
gaatttgtaggggtcggaaatttatacccctgaaatttgcagatatgcaaaaaaaaaaaaaaaacaggaactacttttgtttgattgtaagctagtttga |
47011219 |
T |
|
| Q |
198 |
aaataagtgaaataactcggagactaattttttagtaagtgactaattttccagaatataaattagatacaagttaacagaaggaccaagttgctcgaca |
297 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
47011220 |
aaataagtgaaataactcggagactaattttgtagtaagtgactaattttccagaatataaattagatacatgttaacagaaggaccaagttgttcgaca |
47011319 |
T |
|
| Q |
298 |
taaatgtctgtggtgct |
314 |
Q |
| |
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||||||| ||| |||| |
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| T |
47011320 |
aaaatgtcagtgatgct |
47011336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 24133681 - 24133720
Alignment:
| Q |
257 |
aaattagatacaagttaacagaaggaccaagttgctcgac |
296 |
Q |
| |
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| T |
24133681 |
aaattagatacaagttaatagaaggaccaatttgctcgac |
24133720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 41688549 - 41688593
Alignment:
| Q |
256 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
300 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
41688549 |
taaattagatacaagttaatagaagaaccaagttgctcgacataa |
41688593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 44008431 - 44008390
Alignment:
| Q |
255 |
ataaattagatacaagttaacagaaggaccaagttgctcgac |
296 |
Q |
| |
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||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
44008431 |
ataaactagattcaagttaacagaaagaccaagttgctcgac |
44008390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 54064674 - 54064718
Alignment:
| Q |
256 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
300 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||| |||||| |
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|
| T |
54064674 |
taaattagatacaagttattagaaggaccaagctgctccacataa |
54064718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 3437716 - 3437679
Alignment:
| Q |
256 |
taaattagatacaagttaacagaaggaccaagttgctc |
293 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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|
| T |
3437716 |
taaattagatacaagttaacagaaaaaccaagttgctc |
3437679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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