View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20454_high_2 (Length: 634)
Name: NF20454_high_2
Description: NF20454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20454_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 12933961 - 12933823
Alignment:
| Q |
9 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
107 |
Q |
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| T |
12933961 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
12933863 |
T |
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| Q |
108 |
atataaatctcctcttccaaatctccatgaagaaatgcag |
147 |
Q |
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| T |
12933862 |
atgtagatctcttcatctaaatctccatgaagaaatgcag |
12933823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
99 |
ggttgctccatataaatctcctcttccaaatctccatg |
136 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 14177231 - 14177093
Alignment:
| Q |
9 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
107 |
Q |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
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| Q |
108 |
atataaatctcctcttccaaatctccatgaagaaatgcag |
147 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaatgcag |
14177093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 28608644 - 28608782
Alignment:
| Q |
9 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
107 |
Q |
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| T |
28608644 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc |
28608742 |
T |
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| Q |
108 |
atataaatctcctcttccaaatctccatgaagaaatgcag |
147 |
Q |
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| T |
28608743 |
atgtagatctcttcatctaaatctccatgaagaaatgcag |
28608782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20706234 - 20706187
Alignment:
| Q |
98 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgca |
146 |
Q |
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| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgca |
20706187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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