View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20455_low_1 (Length: 514)

Name: NF20455_low_1
Description: NF20455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20455_low_1
NF20455_low_1
[»] chr5 (13 HSPs)
chr5 (16-239)||(3255748-3255971)
chr5 (244-402)||(3255556-3255714)
chr5 (429-503)||(3255455-3255529)
chr5 (282-325)||(5377121-5377164)
chr5 (284-331)||(10771806-10771853)
chr5 (284-325)||(912571-912612)
chr5 (284-325)||(20982136-20982177)
chr5 (182-239)||(26796341-26796398)
chr5 (182-239)||(26799859-26799916)
chr5 (182-239)||(26807409-26807466)
chr5 (182-238)||(7097341-7097397)
chr5 (182-218)||(38105019-38105055)
chr5 (184-228)||(40731174-40731218)
[»] chr4 (8 HSPs)
chr4 (179-238)||(39178371-39178430)
chr4 (182-238)||(47771874-47771930)
chr4 (184-233)||(50298411-50298460)
chr4 (184-232)||(39886715-39886763)
chr4 (298-332)||(19394866-19394900)
chr4 (182-223)||(11877717-11877758)
chr4 (284-325)||(29376008-29376049)
chr4 (183-236)||(35064734-35064787)
[»] chr1 (9 HSPs)
chr1 (250-330)||(18327065-18327146)
chr1 (182-222)||(4078283-4078323)
chr1 (284-324)||(35017687-35017727)
chr1 (190-237)||(19389789-19389836)
chr1 (179-233)||(5894304-5894357)
chr1 (250-318)||(4757408-4757477)
chr1 (194-238)||(567440-567484)
chr1 (284-324)||(32958742-32958782)
chr1 (180-216)||(34404928-34404964)
[»] chr7 (8 HSPs)
chr7 (183-238)||(48131228-48131283)
chr7 (181-232)||(32156886-32156937)
chr7 (184-239)||(46945775-46945830)
chr7 (184-222)||(40598467-40598505)
chr7 (292-325)||(32410653-32410686)
chr7 (182-222)||(425973-426013)
chr7 (183-239)||(27481428-27481484)
chr7 (300-328)||(48470165-48470193)
[»] chr3 (13 HSPs)
chr3 (183-230)||(37138241-37138288)
chr3 (179-233)||(46886838-46886891)
chr3 (289-325)||(33880481-33880517)
chr3 (184-239)||(43116562-43116617)
chr3 (182-239)||(9995853-9995910)
chr3 (182-239)||(10216870-10216927)
chr3 (182-239)||(10220389-10220446)
chr3 (292-325)||(31365112-31365145)
chr3 (184-233)||(44014934-44014983)
chr3 (189-234)||(45083041-45083086)
chr3 (279-319)||(5407384-5407424)
chr3 (284-324)||(22667508-22667548)
chr3 (284-324)||(22724147-22724187)
[»] chr2 (14 HSPs)
chr2 (186-237)||(41406955-41407006)
chr2 (182-222)||(28039468-28039508)
chr2 (183-233)||(36534668-36534717)
chr2 (185-222)||(4090246-4090283)
chr2 (292-325)||(7928222-7928255)
chr2 (182-235)||(10884604-10884657)
chr2 (180-221)||(12140442-12140483)
chr2 (292-325)||(15305787-15305820)
chr2 (284-325)||(40759265-40759306)
chr2 (180-233)||(41880643-41880696)
chr2 (182-222)||(787236-787276)
chr2 (182-238)||(1056239-1056295)
chr2 (181-233)||(39659659-39659710)
chr2 (186-238)||(41407524-41407576)
[»] chr8 (14 HSPs)
chr8 (184-238)||(2482742-2482796)
chr8 (184-233)||(2840239-2840288)
chr8 (184-233)||(2844926-2844975)
chr8 (182-235)||(4389822-4389875)
chr8 (292-332)||(43717851-43717891)
chr8 (179-238)||(2492608-2492667)
chr8 (183-230)||(37353392-37353439)
chr8 (184-233)||(2833471-2833520)
chr8 (284-325)||(4560607-4560648)
chr8 (184-233)||(16162645-16162694)
chr8 (179-220)||(31891794-31891835)
chr8 (176-205)||(34236035-34236064)
chr8 (284-324)||(7616313-7616353)
chr8 (284-332)||(43504856-43504904)
[»] chr6 (5 HSPs)
chr6 (182-222)||(7946025-7946065)
chr6 (186-238)||(33890664-33890716)
chr6 (184-238)||(33826867-33826921)
chr6 (182-231)||(28621254-28621303)
chr6 (182-222)||(2734950-2734990)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 3255971 - 3255748
Alignment:
Q  16 agttcatcaaaatgttgtgcaactaggtaattaatctcatcagatatcagttttagtagaaatttacattttataatccgtcgtgcatcaattcactaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3255971 agttcatcaaaatgttgtgcaactaggtaattaatctcatcagatatcagttttagtagaaatttgcattttataatccgtcgtgcatcaattcactaat 3255872  T
Q  116 tgcattgtgaatttgtgataacacttagttcgtcaatttcttttttcaaatcccaatctatatggtcctgtttggataaacaacttattttgaagtttat 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255871 tgcattgtgaatttgtgataacactgagttcgtcaatttcttttttcaaatcccaatctatatggtcctgtttggataaacaacttattttgaagtttat 3255772  T
Q  216 agcataaatgcttatcatataagt 239  Q
    ||||||||||||||||||||||||    
T  3255771 agcataaatgcttatcatataagt 3255748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 244 - 402
Target Start/End: Complemental strand, 3255714 - 3255556
Alignment:
Q  244 atggagataagttgttttcataaattctacaaaatatattacaagtgattatgacaatagataagctcaaataagccaatcctaataggagttcgaggtg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255714 atggagataagttgttttcataaattctacaaaatatattacaagtgattatgacaatagataagctcaaataagccaatcctaataggagttcgaggtg 3255615  T
Q  344 cacacgctactgtttgaattaatatcttgtgccatggcaatttttgttgtaaactaaag 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255614 cacacgctactgtttgaattaatatcttgtgccatggcaatttttgttgtaaactaaag 3255556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 3255529 - 3255455
Alignment:
Q  429 tgataattcattagattttgtttctattatgtgtacattatgcttttgaatttttatatacatatctgtatctgt 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255529 tgataattcattagattttgtttctattatgtgtacattatgcttttgaatttttatatacatatctgtatctgt 3255455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 5377164 - 5377121
Alignment:
Q  282 ttacaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  5377164 ttacaagtgcttatgtcaatagataagctcaaataagccaatcc 5377121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 10771853 - 10771806
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcctaatag 331  Q
    ||||||| ||||| || ||||||||||||||||||||||||| |||||    
T  10771853 acaagtgcttatgccagtagataagctcaaataagccaatccaaatag 10771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 912612 - 912571
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||| |||||||||||||||| || ||||||||||||||    
T  912612 acaagtgcttatgacaatagataacctaaaataagccaatcc 912571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 20982177 - 20982136
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||| ||| |||| |||||||||||||||||||||||||    
T  20982177 acaagtgtttacgacagtagataagctcaaataagccaatcc 20982136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 26796341 - 26796398
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  26796341 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 26796398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 26799859 - 26799916
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  26799859 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 26799916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 26807409 - 26807466
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  26807409 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 26807466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 7097341 - 7097397
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    ||||||||| |||||| |||| ||  | | |||||||||||||||||||||||||||    
T  7097341 cctgtttggctaaacagcttaattatatgcttatagcataaatgcttatcatataag 7097397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 38105055 - 38105019
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagc 218  Q
    |||||||||||||||||||||||||| || |||||||    
T  38105055 cctgtttggataaacaacttattttgcagcttatagc 38105019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40731174 - 40731218
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgctt 228  Q
    ||||||||||||||| |||||||| || ||||||||||| |||||    
T  40731174 tgtttggataaacaaattattttgcagcttatagcataagtgctt 40731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 39178430 - 39178371
Alignment:
Q  179 ggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    ||||||||||||||||||||||||||||  || |||||| |||| |||||||||||||||    
T  39178430 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 39178371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 47771874 - 47771930
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||||||||||||||| ||||||||| || |||||||||||  ||||||||||||||    
T  47771874 cctgtttggataaacagcttattttggagcttatagcataagcgcttatcatataag 47771930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 50298411 - 50298460
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcat 50298460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 39886763 - 39886715
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatca 232  Q
    ||||||||||||||| |||||||| || |||||||||||| ||||||||    
T  39886763 tgtttggataaacaaattattttgcagcttatagcataaacgcttatca 39886715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 19394900 - 19394866
Alignment:
Q  298 caatagataagctcaaataagccaatcctaatagg 332  Q
    |||||||||||||||||||||||||||| ||||||    
T  19394900 caatagataagctcaaataagccaatccaaatagg 19394866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 11877717 - 11877758
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaa 223  Q
    |||||||| ||||||||||||||||| || ||||||||||||    
T  11877717 cctgtttgaataaacaacttattttgcagattatagcataaa 11877758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 29376008 - 29376049
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  29376008 acaagtgcttatgtcaatagataagttcaaataagccaatcc 29376049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 35064734 - 35064787
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatata 236  Q
    |||||||||||||||||||| |||| | ||||||||| ||  ||||||||||||    
T  35064734 ctgtttggataaacaacttaatttgcaatttatagcaaaagcgcttatcatata 35064787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 18327146 - 18327065
Alignment:
Q  250 ataagttgttttcataaattctacaaaata-tattacaagtgattatgacaatagataagctcaaataagccaatcctaata 330  Q
    ||||||||||||||||| |||| | ||||| | | | ||||| |||||||| ||||||||||||||||||||||||| ||||    
T  18327146 ataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaata 18327065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 4078323 - 4078283
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  4078323 cctgtttggataaacaacttattttgaagtttacagcataa 4078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 35017687 - 35017727
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatc 324  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  35017687 acaagtgtttatgccaatagataagctcaaataagccaatc 35017727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 19389789 - 19389836
Alignment:
Q  190 gataaacaacttattttgaagtttatagcataaatgcttatcatataa 237  Q
    |||| ||||||||||||| || |||||||||||| |||||||||||||    
T  19389789 gatagacaacttattttgtagcttatagcataaacgcttatcatataa 19389836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 5894357 - 5894304
Alignment:
Q  179 ggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||||||| |||| ||||||| |||||||| || ||||||||||    
T  5894357 ggtcctgtttggataaacagctta-tttgaagcttatagcacaagtgcttatcat 5894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 4757408 - 4757477
Alignment:
Q  250 ataagttgttttcataaattctacaaaata-tattacaagtgattatgacaatagataagctcaaataag 318  Q
    ||||||||||||||||| |||| | ||||  | | ||||||| ||||| |||||||||||||||||||||    
T  4757408 ataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaataag 4757477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 567440 - 567484
Alignment:
Q  194 aacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||| |||| ||| ||| |||||||||||||||||||||||||||    
T  567440 aacaccttaattttaagcttatagcataaatgcttatcatataag 567484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 32958742 - 32958782
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatc 324  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  32958742 acaagtgcttatgacagtagataagctcaaataagtcaatc 32958782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 34404928 - 34404964
Alignment:
Q  180 gtcctgtttggataaacaacttattttgaagtttata 216  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  34404928 gtcctgtttggataaacaacttaatttgaagcttata 34404964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 48131228 - 48131283
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    ||||||||||| ||||||||||||| || ||| ||||||| |||||||||||||||    
T  48131228 ctgtttggatacacaacttattttgcagcttacagcataagtgcttatcatataag 48131283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 32156886 - 32156937
Alignment:
Q  181 tcctgtttggataaacaacttattttgaagtttatagcataaatgcttatca 232  Q
    |||| ||||||||||||||||| |||| || |||||||||||| ||||||||    
T  32156886 tcctatttggataaacaacttaatttgcagcttatagcataaacgcttatca 32156937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 46945775 - 46945830
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    ||||||||||||||||||| |||| || ||||||| |||  |||||||||||||||    
T  46945775 tgtttggataaacaacttagtttgcagcttatagcttaagcgcttatcatataagt 46945830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 40598467 - 40598505
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  40598467 tgtttgtataaacaacttaatttgaagtttatagcataa 40598505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 32410653 - 32410686
Alignment:
Q  292 ttatgacaatagataagctcaaataagccaatcc 325  Q
    ||||| ||||||||||||||||||||||||||||    
T  32410653 ttatgccaatagataagctcaaataagccaatcc 32410686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 426013 - 425973
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||||||||||| ||||||||||| || |||||||||||    
T  426013 cctgtttggataaataacttattttgcagcttatagcataa 425973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 27481484 - 27481428
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||| || |  | |||||||||||||| |||| ||||||||    
T  27481484 ctgtttggataaacaacttaattaggtgcttatagcataaatgtttattatataagt 27481428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 48470165 - 48470193
Alignment:
Q  300 atagataagctcaaataagccaatcctaa 328  Q
    |||||||||||||||||||||||||||||    
T  48470165 atagataagctcaaataagccaatcctaa 48470193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 37138241 - 37138288
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttat 230  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  37138241 ctgtttggataaacaacttaatttgaagcttatagcataagtgcttat 37138288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 46886891 - 46886838
Alignment:
Q  179 ggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    |||||||||||||||||||||||| |||| || ||||||||||| ||||||||||    
T  46886891 ggtcctgtttggataaacaactta-tttgcagcttatagcataagtgcttatcat 46886838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 33880517 - 33880481
Alignment:
Q  289 tgattatgacaatagataagctcaaataagccaatcc 325  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33880517 tgattatgtcaatagataagctcaaataagccaatcc 33880481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 43116617 - 43116562
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    ||||||||||||||||||| |||   |||||||||||||||| |||||||| ||||    
T  43116617 tgtttggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagt 43116562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 9995853 - 9995910
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  9995853 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 9995910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 10216870 - 10216927
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  10216870 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 10216927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 10220389 - 10220446
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataagt 239  Q
    |||||||||||||||||||||||||| |  |||| ||||||  ||||| |||||||||    
T  10220389 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataagt 10220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 31365145 - 31365112
Alignment:
Q  292 ttatgacaatagataagctcaaataagccaatcc 325  Q
    ||||| ||||||||||||||||||||||||||||    
T  31365145 ttatgccaatagataagctcaaataagccaatcc 31365112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 44014983 - 44014934
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||| ||| |||| ||||||||||||| ||| |||||||    
T  44014983 tgtttggataaacaaattaatttgtagtttatagcatacatgtttatcat 44014934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 45083041 - 45083086
Alignment:
Q  189 ggataaacaacttattttgaagtttatagcataaatgcttatcata 234  Q
    |||||||||||||| |||| |||||||||||||||  |||||||||    
T  45083041 ggataaacaacttaatttgcagtttatagcataaaaacttatcata 45083086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 5407424 - 5407384
Alignment:
Q  279 atattacaagtgattatgacaatagataagctcaaataagc 319  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  5407424 atatcacaagtgattatatcaatagataagctcaaataagc 5407384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 22667508 - 22667548
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatc 324  Q
    ||||||| ||||| || ||||||||||||||||||||||||    
T  22667508 acaagtgcttatgtcagtagataagctcaaataagccaatc 22667548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 22724147 - 22724187
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatc 324  Q
    ||||||| ||||| || ||||||||||||||||||||||||    
T  22724147 acaagtgcttatgtcagtagataagctcaaataagccaatc 22724187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 41406955 - 41407006
Alignment:
Q  186 tttggataaacaacttattttgaagtttatagcataaatgcttatcatataa 237  Q
    |||||||||||||||||||||| || |||| |||||| ||||||||||||||    
T  41406955 tttggataaacaacttattttgtagcttatggcataagtgcttatcatataa 41407006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 28039508 - 28039468
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  28039508 cctgtttggataaacaacttaatttgcagtttatagcataa 28039468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 36534668 - 36534717
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||||||||||||  |||||||| ||||| ||||||||||    
T  36534668 ctgtttggataaacaacttatttt-cagtttataacataagtgcttatcat 36534717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 4090246 - 4090283
Alignment:
Q  185 gtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  4090246 gtttggataaacaacttattttgaagcttaaagcataa 4090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 7928255 - 7928222
Alignment:
Q  292 ttatgacaatagataagctcaaataagccaatcc 325  Q
    ||||| ||||||||||||||||||||||||||||    
T  7928255 ttatgtcaatagataagctcaaataagccaatcc 7928222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 10884657 - 10884604
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatat 235  Q
    |||||||||||||||||| || || | || || |||||||||||||||||||||    
T  10884657 cctgtttggataaacaacctaattagtagcttttagcataaatgcttatcatat 10884604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 12140442 - 12140483
Alignment:
Q  180 gtcctgtttggataaacaacttattttgaagtttatagcata 221  Q
    |||||||||||||||||||||||||||| || ||||| ||||    
T  12140442 gtcctgtttggataaacaacttattttgcagcttatatcata 12140483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 15305787 - 15305820
Alignment:
Q  292 ttatgacaatagataagctcaaataagccaatcc 325  Q
    ||||| ||||||||||||||||||||||||||||    
T  15305787 ttatgtcaatagataagctcaaataagccaatcc 15305820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 40759265 - 40759306
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  40759265 acaagtgcttatgtcaatagataagctcaaataaggcaatcc 40759306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 41880696 - 41880643
Alignment:
Q  180 gtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||||||||||| |||| || |||||||| ||  |||||||||    
T  41880696 gtcctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcat 41880643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 787236 - 787276
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||||| |||| ||||||||||||||| |||||||||||    
T  787236 cctgtttgaataagcaacttattttgaagcttatagcataa 787276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 1056295 - 1056239
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||||||| ||||| ||||| ||||| || ||||||||||| ||||| |||||||||    
T  1056295 cctgtttgaataaataactttttttgcagcttatagcataactgcttgtcatataag 1056239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 39659710 - 39659659
Alignment:
Q  181 tcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    |||||||||||||||||||||| |||| || ||| |||| |||||||||||||    
T  39659710 tcctgtttggataaacaactta-tttgcagcttagagcacaaatgcttatcat 39659659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 41407524 - 41407576
Alignment:
Q  186 tttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||||||||||||||||  ||| |||||||| ||||| |||||||||| ||||    
T  41407524 tttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaag 41407576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 2482742 - 2482796
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||||||||||||| |||| ||||||| ||||||||||||  |||||||||||||    
T  2482742 tgtttggataaacagcttaatttgaagcttatagcataaacacttatcatataag 2482796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 2840239 - 2840288
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    |||||| ||||||||||||||||| || ||||||||||| ||||||||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcat 2840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 2844926 - 2844975
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    |||||| ||||||||||||||||| || ||||||||||| ||||||||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcat 2844975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 4389822 - 4389875
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatat 235  Q
    |||||||||||||| ||||||||||| || |||||||| || ||||||||||||    
T  4389822 cctgtttggataaataacttattttgcagcttatagcagaagtgcttatcatat 4389875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 43717891 - 43717851
Alignment:
Q  292 ttatgacaatagataagctcaaataagccaatcctaatagg 332  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  43717891 ttatgtcaatagataagctcaaataagccaatccaaatagg 43717851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 2492608 - 2492667
Alignment:
Q  179 ggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||| |||||||||||  |||| |||||| |||||||||||||| || ||||||||||||    
T  2492608 ggtcatgtttggataattaactcattttgtagtttatagcataagtgtttatcatataag 2492667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 37353439 - 37353392
Alignment:
Q  183 ctgtttggataaacaacttattttgaagtttatagcataaatgcttat 230  Q
    |||||||||||||||||||  |||| || |||||||||||||||||||    
T  37353439 ctgtttggataaacaacttgatttgcagcttatagcataaatgcttat 37353392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 2833520 - 2833471
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    |||||||||||||  ||||||||| || ||||||||||| ||||||||||    
T  2833520 tgtttggataaactgcttattttgcagcttatagcataagtgcttatcat 2833471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 4560607 - 4560648
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcc 325  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  4560607 acaagtgcttatgtcaatagataagctcaaataagtcaatcc 4560648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 16162645 - 16162694
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcat 233  Q
    ||||||||||||||| ||| |||| ||||||||||||| ||| |||||||    
T  16162645 tgtttggataaacaaattaatttgtagtttatagcatacatgtttatcat 16162694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 31891794 - 31891835
Alignment:
Q  179 ggtcctgtttggataaacaacttattttgaagtttatagcat 220  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  31891794 ggtcctatttggataaacaacttaatttgcagtttatagcat 31891835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 34236035 - 34236064
Alignment:
Q  176 tatggtcctgtttggataaacaacttattt 205  Q
    ||||||||||||||||||||||||||||||    
T  34236035 tatggtcctgtttggataaacaacttattt 34236064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 7616353 - 7616313
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatc 324  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  7616353 acaagtgaatatgacaatagataagttcaaataagtcaatc 7616313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 43504856 - 43504904
Alignment:
Q  284 acaagtgattatgacaatagataagctcaaataagccaatcctaatagg 332  Q
    ||||||| ||| | || |||||||||| |||||||||||||||||||||    
T  43504856 acaagtgcttaagccagtagataagcttaaataagccaatcctaatagg 43504904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 7946065 - 7946025
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  7946065 cctgtttggataaacaacttattttgtagcttatagcataa 7946025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 33890664 - 33890716
Alignment:
Q  186 tttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    |||||||||| ||||||||||| || ||||||||||||  |||||||||||||    
T  33890664 tttggataaataacttattttgcagcttatagcataaacacttatcatataag 33890716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 33826921 - 33826867
Alignment:
Q  184 tgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 238  Q
    ||||||||||||||| |||||||| |  ||| ||||||| |||||||||||||||    
T  33826921 tgtttggataaacaatttattttgcatcttaaagcataagtgcttatcatataag 33826867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 28621303 - 28621254
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataaatgcttatc 231  Q
    |||||| |||| |||||||||||||||||||| ||  |||||||||||||    
T  28621303 cctgttaggatgaacaacttattttgaagtttttacaataaatgcttatc 28621254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 2734950 - 2734990
Alignment:
Q  182 cctgtttggataaacaacttattttgaagtttatagcataa 222  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  2734950 cctgtttggataaacagcttaatttgaagtttagagcataa 2734990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University