View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20455_low_3 (Length: 371)

Name: NF20455_low_3
Description: NF20455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20455_low_3
NF20455_low_3
[»] chr1 (20 HSPs)
chr1 (19-371)||(28937959-28938312)
chr1 (137-203)||(7218102-7218168)
chr1 (119-176)||(28467362-28467420)
chr1 (119-176)||(30371105-30371163)
chr1 (119-203)||(25479538-25479623)
chr1 (112-176)||(29007771-29007836)
chr1 (112-176)||(49517020-49517085)
chr1 (137-197)||(25005831-25005891)
chr1 (113-172)||(38578478-38578538)
chr1 (112-174)||(4200179-4200242)
chr1 (112-170)||(15360844-15360903)
chr1 (137-176)||(15361689-15361728)
chr1 (113-203)||(16322800-16322891)
chr1 (137-196)||(17269226-17269285)
chr1 (137-176)||(25006089-25006128)
chr1 (114-203)||(6932989-6933079)
chr1 (113-163)||(29793991-29794041)
chr1 (112-165)||(44936656-44936710)
chr1 (119-203)||(34179900-34179985)
chr1 (113-176)||(36070201-36070265)
[»] chr4 (21 HSPs)
chr4 (112-203)||(49219089-49219181)
chr4 (113-171)||(4071833-4071892)
chr4 (119-176)||(8130131-8130189)
chr4 (113-175)||(10192235-10192298)
chr4 (121-203)||(52735081-52735164)
chr4 (112-169)||(11917509-11917567)
chr4 (119-176)||(30207626-30207683)
chr4 (113-176)||(45128365-45128429)
chr4 (113-176)||(49085940-49086004)
chr4 (114-176)||(55870396-55870459)
chr4 (137-203)||(21157744-21157810)
chr4 (119-176)||(24160550-24160608)
chr4 (138-203)||(26747430-26747496)
chr4 (113-174)||(42321936-42321998)
chr4 (143-176)||(11842197-11842230)
chr4 (113-175)||(8422895-8422956)
chr4 (159-203)||(12650312-12650356)
chr4 (120-175)||(18630638-18630694)
chr4 (113-176)||(24160941-24161005)
chr4 (113-176)||(24929444-24929508)
chr4 (113-203)||(43371999-43372088)
[»] chr7 (13 HSPs)
chr7 (143-203)||(40439036-40439096)
chr7 (113-176)||(1417215-1417279)
chr7 (127-203)||(36370635-36370711)
chr7 (137-176)||(24909640-24909679)
chr7 (137-175)||(24895332-24895370)
chr7 (116-203)||(17989051-17989139)
chr7 (113-173)||(33894574-33894634)
chr7 (112-203)||(38010664-38010756)
chr7 (113-176)||(49060491-49060555)
chr7 (142-203)||(30812129-30812190)
chr7 (113-176)||(40689041-40689105)
chr7 (120-203)||(44151508-44151592)
chr7 (119-174)||(45777228-45777284)
[»] scaffold0049 (1 HSPs)
scaffold0049 (112-176)||(58148-58213)
[»] chr5 (16 HSPs)
chr5 (121-200)||(38047886-38047966)
chr5 (113-166)||(4991008-4991062)
chr5 (141-203)||(32408620-32408682)
chr5 (112-176)||(39823176-39823241)
chr5 (112-176)||(18704091-18704155)
chr5 (113-168)||(35135725-35135781)
chr5 (113-172)||(42181151-42181211)
chr5 (113-195)||(14295457-14295540)
chr5 (137-176)||(34205215-34205254)
chr5 (113-203)||(34690825-34690915)
chr5 (113-176)||(4855649-4855713)
chr5 (117-176)||(9634727-9634787)
chr5 (136-176)||(10272486-10272526)
chr5 (113-173)||(16458037-16458097)
chr5 (159-203)||(29201531-29201575)
chr5 (112-203)||(37588388-37588480)
[»] chr8 (11 HSPs)
chr8 (113-203)||(4558749-4558840)
chr8 (113-189)||(1470898-1470975)
chr8 (119-203)||(34551077-34551162)
chr8 (137-203)||(29973057-29973123)
chr8 (123-176)||(34770853-34770907)
chr8 (138-203)||(7645955-7646020)
chr8 (112-176)||(38561676-38561741)
chr8 (120-203)||(2093237-2093321)
chr8 (121-176)||(24558812-24558868)
chr8 (113-176)||(42597352-42597416)
chr8 (135-203)||(43709247-43709315)
[»] chr3 (19 HSPs)
chr3 (122-176)||(32555036-32555091)
chr3 (120-178)||(48364932-48364991)
chr3 (112-178)||(48397596-48397663)
chr3 (148-198)||(20502101-20502151)
chr3 (112-176)||(24235738-24235803)
chr3 (116-176)||(37788814-37788875)
chr3 (113-176)||(1395622-1395686)
chr3 (115-202)||(33965518-33965608)
chr3 (137-203)||(23315602-23315668)
chr3 (122-203)||(27792832-27792914)
chr3 (112-176)||(10101531-10101596)
chr3 (112-176)||(10212456-10212521)
chr3 (112-176)||(10357383-10357448)
chr3 (112-157)||(20143875-20143920)
chr3 (112-157)||(23269269-23269314)
chr3 (113-165)||(37689450-37689503)
chr3 (137-173)||(28779332-28779368)
chr3 (113-176)||(43116483-43116547)
chr3 (136-176)||(48807683-48807723)
[»] chr2 (19 HSPs)
chr2 (122-176)||(11513858-11513913)
chr2 (137-203)||(43141847-43141913)
chr2 (113-176)||(17952756-17952820)
chr2 (112-203)||(22681213-22681305)
chr2 (119-203)||(43635129-43635213)
chr2 (113-171)||(31740019-31740078)
chr2 (112-169)||(3423830-3423888)
chr2 (123-176)||(6993779-6993833)
chr2 (112-201)||(43199364-43199454)
chr2 (119-203)||(6988072-6988157)
chr2 (113-177)||(9878736-9878801)
chr2 (112-176)||(10143122-10143187)
chr2 (113-173)||(25609747-25609808)
chr2 (120-200)||(28803537-28803618)
chr2 (142-203)||(39983323-39983384)
chr2 (113-176)||(23143033-23143097)
chr2 (113-176)||(23554823-23554887)
chr2 (113-176)||(28933775-28933839)
chr2 (137-177)||(33944581-33944621)
[»] scaffold0549 (2 HSPs)
scaffold0549 (119-176)||(1779-1837)
scaffold0549 (119-176)||(3869-3927)
[»] chr6 (10 HSPs)
chr6 (119-176)||(11340680-11340738)
chr6 (113-202)||(28660789-28660879)
chr6 (113-176)||(1402947-1403011)
chr6 (113-176)||(2027461-2027525)
chr6 (113-176)||(4006665-4006729)
chr6 (113-176)||(9668040-9668104)
chr6 (125-203)||(32386591-32386670)
chr6 (119-203)||(281876-281961)
chr6 (119-203)||(27595595-27595680)
chr6 (113-172)||(10452419-10452479)
[»] scaffold0024 (1 HSPs)
scaffold0024 (112-176)||(27526-27591)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 28937959 - 28938312
Alignment:
Q  19 aagtcttcttgcaattccctgttacataaaatgcatatttagactctgtcacgataaacaacttaattaagcgcttcatataagtgataatgtttatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28937959 aagtcttcttgcaattccctgttacataaaatgcatatttagactctgtcacgataaacaacttaattaagcgcttcatataagtgataatgtttatttt 28938058  T
Q  119 tataacaaaa-gataacataagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaatcagagtagataagt 217  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28938059 tataacaaaaagataacataagtcaaatcattttcatatacgctataagttgttttcattaccaatcctggagagcttatggaaatcagagtagataagt 28938158  T
Q  218 tcaaataaattaattaaaataggactatagtatatcacaagttagttggaatgcagttgcgacaatcctgcattcacacaatttaaaccgtctgattaag 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  28938159 tcaaataaattaattaaaataggactatagtataccacaagttagtcggaatgcagttgagacaatcctgcattcacacaatttaatcggtctgattaag 28938258  T
Q  318 atcggatagttcgtattttaacatgcaaaacaagctaaaacactaggactgttt 371  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  28938259 atcggatagctcgtattttaacatgcaaaacaagctaaaacacgtggactgttt 28938312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 7218168 - 7218102
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||| |||||||||| |||||||||||||||||| ||| |||||| ||| |||||| ||||    
T  7218168 aagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaat 7218102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 28467420 - 28467362
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcat 28467362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 30371105 - 30371163
Alignment:
Q  119 tataacaaaagataacataag-tcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| ||||  ||||||| |||||||||| ||||||||||||||||||    
T  30371105 tataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcat 30371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 25479538 - 25479623
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||| |||||||| |||| |||||||| | |||||||| |||||||||||||||||| | | |||||  |||||||||| ||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaat 25479623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 29007836 - 29007771
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| |||||||||||| ||  ||| |||||| |||||||||||| ||||||||||||||||||    
T  29007836 ttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 49517020 - 49517085
Alignment:
Q  112 ttatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| || |||||||||| ||||||| || |||||||| |||||||||    
T  49517020 ttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcat 49517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 25005891 - 25005831
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttat 197  Q
    ||||||| || |||||||||| |||||||||||||||||| | | |||||| |||||||||    
T  25005891 aagtcaacttgttttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 38578478 - 38578538
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttt 172  Q
    ||||| |||||||||||||||||| |||| ||||||||||  |||| ||||||||||||||    
T  38578478 tatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 4200179 - 4200242
Alignment:
Q  112 ttatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttc 174  Q
    |||||||||||||||||||||| || ||||||| || |||||||||| ||||||  ||||||||    
T  4200179 ttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttc 4200242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 15360844 - 15360903
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgt 170  Q
    |||||| ||||||||||||||| |||| |||||| | |||||||||| ||||||||||||    
T  15360844 ttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 15361689 - 15361728
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  15361689 aagtcaaattattttcatataagctataagctgttttcat 15361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 16322800 - 16322891
Alignment:
Q  113 tatttttataacaaaagataacata-agtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||| |||||||||| ||| ||||||| |||||||||| | | |||||| |||||||||   | ||  ||||||||||||||||||    
T  16322800 tatttttatatcaaaagataaaatatagtcaaactattttcatagaagttataagctgttttcataggctattttgaagagcttatggaaat 16322891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 17269226 - 17269285
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagctta 196  Q
    |||||||||| |||||||||| || ||||||||||||||| | | |||||| ||||||||    
T  17269226 aagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagagctta 17269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 25006128 - 25006089
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  25006128 aagtcaaattgttttcatataagctataagttgttttcat 25006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 6933079 - 6932989
Alignment:
Q  114 atttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||| |||| |||| |||||||| |||||||| | | ||| |||| ||||||| |    |||||||||||||||||||||    
T  6933079 atttttataacaaaacataaaataaagtcaaattgttttcatagaagttattagttcttttcataagttgtcctgaagagcttatggaaat 6932989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 29794041 - 29793991
Alignment:
Q  113 tatttttataacaaaagataacataagtcaaattattttcatatacgctat 163  Q
    ||||||| ||||||||||||| |||||||||||| |||||| ||| |||||    
T  29794041 tatttttgtaacaaaagataaaataagtcaaattgttttcaaataagctat 29793991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 44936710 - 44936656
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataa 165  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||    
T  44936710 ttatttctataacaaaagataagataaagtcaaactattttcatataagctataa 44936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 34179985 - 34179900
Alignment:
Q  119 tataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||| || |||||||||| |||| || || |||||||  ||||||||| | | |||||||| || ||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaactatcctgaaaagtttatggaaat 34179900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 36070201 - 36070265
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||||||||| || |||| ||||| | |||  ||| ||||||||||||||||||    
T  36070201 tatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcat 36070265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 49219089 - 49219181
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||| |||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||| | | ||| | ||||| ||||||||||    
T  49219089 ttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaat 49219181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgtt 171  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 8130131 - 8130189
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||    
T  8130131 tataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcat 8130189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 10192235 - 10192298
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttca 175  Q
    ||||||||||||||||||||  |||| |||||||| |||||||||| | |||||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttca 10192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 52735081 - 52735164
Alignment:
Q  121 taacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||| |||| ||||||||| ||||||||| | |||| ||||||||| | | | ||| ||||||||||||||||||    
T  52735081 taacaaaagataaaataaagtcaaattactttcatataagttatatgttgttttcgtaagctatcttgaagagcttatggaaat 52735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 11917509 - 11917567
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttg 169  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  11917509 ttatttttgtaacaaaagataaaataaagtcaaattattttcatataacctataagttg 11917567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 30207683 - 30207626
Alignment:
Q  119 tataacaaaagataacataagtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||| |||| |||| ||||| | |||||||||| ||||||||||||||||||    
T  30207683 tataacaaaaaataaaataaatcaaactgttttcatataagctataagttgttttcat 30207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 45128429 - 45128365
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| || || |||||||||| ||||||| ||||||| ||||||||||    
T  45128429 tatttctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcat 45128365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 49085940 - 49086004
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||| | | ||||||||||||||||    
T  49085940 tatttatataacaaaagataaaataatgtcaaactattttcatacaagttataagttgttttcat 49086004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 55870459 - 55870396
Alignment:
Q  114 atttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||||||||| | |||| |||||| | |||||| ||| ||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcat 55870396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 21157744 - 21157810
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||| | ||||||| || |||||||| |||||||||   | ||||||||||||||||||||||    
T  21157744 aagtcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatggaaat 21157810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 24160608 - 24160550
Alignment:
Q  119 tataacaaaagataacataagt-caaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||| | |||| ||||||||| || ||||||||||||||||||    
T  24160608 tataacaaaagataatataaattcaaactattttcatgtaagctataagttgttttcat 24160550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 26747496 - 26747430
Alignment:
Q  138 agtcaaattattttcatatacgct-ataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||| |||||||||||| ||| |||||||||||||||||   ||||| |||| |||||||||||    
T  26747496 agtcaaactattttcatataagcttataagttgttttcattagttatcctaaagaacttatggaaat 26747430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 42321998 - 42321936
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttc 174  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||||||   ||||||||||||||    
T  42321998 tatttttataacaaatgataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 11842197 - 11842230
Alignment:
Q  143 aattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| ||||||||||||||||||    
T  11842197 aattattttcatataagctataagttgttttcat 11842230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 8422956 - 8422895
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttca 175  Q
    ||||||||||| ||||||||| |||| ||||  || |||||||||| |||||||||||||||||    
T  8422956 tatttttataaaaaaagataaaataaagtca--ttgttttcatataagctataagttgttttca 8422895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 12650356 - 12650312
Alignment:
Q  159 gctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||| ||||||||| ||| |||||| |||||||||||||||    
T  12650356 gctataagctgttttcataacctatcctggagagcttatggaaat 12650312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 18630638 - 18630694
Alignment:
Q  120 ataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttca 175  Q
    |||||||||||||| |||| ||||| |  |||||||||| |||||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 24160941 - 24161005
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||| ||||| || |||| ||||||||||||| || |||||||||||| |||||    
T  24160941 tatttctataacaaaggataaaatcaagttaaattattttcatgtaggctataagttgtgttcat 24161005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 24929444 - 24929508
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| ||| || | |||||||| | ||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcat 24929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 43372088 - 43371999
Alignment:
Q  113 tatttttataacaaaagataacata-agtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||||||||| ||| ||||||| | |||| ||||| |||||||  || |||||| | | ||||  ||||||||||||||||    
T  43372088 tatttttataacaaaagataaaatacagtcaaactgtttttatataagctataaactgatttcataagctatcc--aagagcttatggaaat 43371999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40439036 - 40439096
Alignment:
Q  143 aattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||| |||||||||| | |||||||||||||||||| | ||||||||||||||||||||||    
T  40439036 aattgttttcatatatgttataagttgttttcattagctatcctgaagagcttatggaaat 40439096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 1417215 - 1417279
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| |||||||| |||||||||| || |||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcat 1417279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 36370635 - 36370711
Alignment:
Q  127 aagataacataagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||| |||||| ||| | |||||| ||| |||||||||||||| ||| | | ||||||||||||||||||||||    
T  36370635 aagataaaataagttaaactgttttcacataagctataagttgtttccataaactatcctgaagagcttatggaaat 36370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 24909640 - 24909679
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  24909640 aagtcaaattattttcatataagctataagttgttttcat 24909679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 24895332 - 24895370
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttca 175  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24895332 aagtcaaattattttcatataagctataagttgttttca 24895370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 17989139 - 17989051
Alignment:
Q  116 ttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||| |||| |||| |||||| | ||||||||||  |||||| |||||||||| | |  |||||||||||||||| ||||    
T  17989139 ttttataacaaaatataaaataaagtcaaactgttttcatataaactataatttgttttcataagctctcctgaagagcttatgaaaat 17989051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 33894574 - 33894634
Alignment:
Q  113 tatttttataacaaaagataacataagtcaaattattttcatatacgctataagttgtttt 173  Q
    ||||| ||||||||||||||| |||||||||| | |||||||||| ||| || ||||||||    
T  33894574 tatttctataacaaaagataaaataagtcaaactgttttcatataagctttatgttgtttt 33894634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 38010664 - 38010756
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||| |||||||||||| | || | |||||| |||||||||| |||||||| ||||||||| | | |||||  ||| |||||||||||    
T  38010664 ttatttttaaaacaaaagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaat 38010756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 49060491 - 49060555
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| |||||||||| |||| |||| ||||||||||||| ||||| |||||||||| |||||||    
T  49060491 tatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcat 49060555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 30812129 - 30812190
Alignment:
Q  142 aaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||| ||||| |||| |||||||| ||||||||||| | ||| || |||||||||||||||    
T  30812129 aaattgttttcgtataagctataagctgttttcattagctatcatggagagcttatggaaat 30812190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 40689105 - 40689041
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| |||| |||||||||| |||| || |||||||||||||||| |||||||| ||| |||||    
T  40689105 tatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcat 40689041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 44151592 - 44151508
Alignment:
Q  120 ataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||||||  |||| || ||| | ||| |||||| |||||||||||||||||| | | ||| |||| |||||||||||||    
T  44151592 ataacaaaagatagaataaagtaaaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaat 44151508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 45777284 - 45777228
Alignment:
Q  119 tataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttc 174  Q
    ||||||||||||||| || |||||||| | ||||||||||  |||||||||||||||    
T  45777284 tataacaaaagataaaattaagtcaaactgttttcatataaactataagttgttttc 45777228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 58213 - 58148
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| |||||||||||||||||||| |||||||  | || ||||||||||||||||||||||||    
T  58213 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 58148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 38047966 - 38047886
Alignment:
Q  121 taacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatgga 200  Q
    ||||||||||||| |||| |||||||||||||||||||  ||||| | ||||||||| | | |||||| ||||||||||||    
T  38047966 taacaaaagataaaataaagtcaaattattttcatatatactatatgctgttttcataagctatcctggagagcttatgga 38047886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 4991062 - 4991008
Alignment:
Q  113 tatttttataacaaaagataacataag-tcaaattattttcatatacgctataag 166  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||    
T  4991062 tatttttataacaaaagataacataagatcaatttattttcatataagttataag 4991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 32408682 - 32408620
Alignment:
Q  141 caaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||||| |||||||  | ||||||| | | ||||||||||||||||||||||    
T  32408682 caaattattttcatataagctataaactattttcataagctatcctgaagagcttatggaaat 32408620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 39823241 - 39823176
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| |||||| || ||||||||| |||| |||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcat 39823176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 18704155 - 18704091
Alignment:
Q  112 ttatttttataacaaaagataacataagtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| |||||||||||||||   |||||||  |||||| ||||| ||||||||||||||||||    
T  18704155 ttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcat 18704091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 35135781 - 35135725
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagtt 168  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttt 172  Q
    ||||||||||||||||||||| | || |||||||  |||||||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 14295457 - 14295540
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagctt 195  Q
    ||||| ||||||||||||||| || |||||||| | |||||||||| |||||||| ||||||| | | | |||||| |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagctt 14295540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 34205215 - 34205254
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  34205215 aagtcaaattatttttatataagctataagttgttttcat 34205254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 34690825 - 34690915
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||| ||||||||||||||| |||| |||| | || ||||||||| ||||||||||||| |||| | | ||| || |||||||||||||||    
T  34690825 tatttctataacaaaagataaaataaagtcacaatactttcatata-gctataagttgttctcataagccatcttggagagcttatggaaat 34690915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4855649 - 4855713
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||||||| |||| |||| || ||||| || ||||||| | ||||||||||||||||    
T  4855649 tatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcat 4855713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 9634727 - 9634787
Alignment:
Q  117 tttataacaaaagat-aacataagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||  ||||| || |||||||||||| | ||||||||||||||||    
T  9634727 tttataacaaaagatgaactaaagtcgaagtattttcatatatgttataagttgttttcat 9634787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 10272526 - 10272486
Alignment:
Q  136 taagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  10272526 taagtcaaattgttttcgtataagctataagttgttttcat 10272486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 16458097 - 16458037
Alignment:
Q  113 tatttttataacaaaagataacataagtcaaattattttcatatacgctataagttgtttt 173  Q
    |||||||||| |||||||||| |||| | ||||| ||||  |||| |||||||||||||||    
T  16458097 tatttttatagcaaaagataaaataacttaaattgtttttgtatatgctataagttgtttt 16458037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 29201531 - 29201575
Alignment:
Q  159 gctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||| ||||||||| ||| |||||| |||||||||||||||    
T  29201531 gctataagctgttttcataacctatcctggagagcttatggaaat 29201575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 37588480 - 37588388
Alignment:
Q  112 ttatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||| ||||| ||||||||| || || |||||   |||||||||| |||||||||||||||||| |   || ||| |||||||||||||||    
T  37588480 ttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataagttattctggagagcttatggaaat 37588388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 4558749 - 4558840
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||| ||||| ||||||||| |||| || |||||||||||||||| |||||||| ||||| ||| | | |||||  |||||||||||||||    
T  4558749 tatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaat 4558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 1470975 - 1470898
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaa 189  Q
    ||||| ||||| ||||||||| |||| ||||||||| ||||||||| |||||||| ||||||||| ||| ||| ||||    
T  1470975 tatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcataacctatcatgaa 1470898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 34551077 - 34551162
Alignment:
Q  119 tataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||||||||||| |||||||||| ||||||| || | |||||||||||||| | |   |||||| |||||||||| ||||    
T  34551077 tataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttcttaagttatcctggagagcttatgaaaat 34551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 29973057 - 29973123
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||| |||||||| ||| |||||||||||||||||| | | |||||  |||| ||||||||||    
T  29973057 aagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtttatggaaat 29973123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 34770853 - 34770907
Alignment:
Q  123 acaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||| |||| |||||||| ||||||| || ||||||||||||||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcat 34770907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 7645955 - 7646020
Alignment:
Q  138 agtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||| ||||||| || |||||||||||||||||| | | | |||| | |||||||||||||    
T  7645955 agtcaaattgttttcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaat 7646020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 38561676 - 38561741
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| |||||| |||||| || ||  |||||||||||||||||    
T  38561676 ttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcat 38561741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 2093237 - 2093321
Alignment:
Q  120 ataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||| ||||||||| |||| |||||||  ||||| | || |||||||||||||||||||| | ||||||||| | |||| |||||    
T  2093237 ataataaaagataaaataaagtcaaatggttttcttttaagctataagttgttttcattagctatcctgaagcgtttatagaaat 2093321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 24558812 - 24558868
Alignment:
Q  121 taacaaaagataa-cataagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||| |  |||| ||||||||||| |||| ||||||||||||||||||    
T  24558812 taacaaaagataaaccgaagttaaattattttcgtataagctataagttgttttcat 24558868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 42597352 - 42597416
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| || ||||| |||||||  | ||||||||||||||||||    
T  42597352 tatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcat 42597416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 43709247 - 43709315
Alignment:
Q  135 ataagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||||  ||||||  || |||||||||||||||||| | | |||||| |||||||||| ||||    
T  43709247 ataagtcaaatggttttcacgtaagctataagttgttttcatgagctatcctggagagcttatgaaaat 43709315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 32555091 - 32555036
Alignment:
Q  122 aacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||    
T  32555091 aacaaaagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 48364991 - 48364932
Alignment:
Q  120 ataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcatta 178  Q
    |||||||||||||| |||| |||||||| ||||||| ||||| |||||||||||||||||    
T  48364991 ataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcatta 48364932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 48397596 - 48397663
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcatta 178  Q
    |||||||||||| ||||||||| |||| |||||||| |||| || || ||||||||||||||||||||    
T  48397596 ttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcatta 48397663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 20502151 - 20502101
Alignment:
Q  148 ttttcatatacgctataagttgttttcattaccaatcctgaagagcttatg 198  Q
    ||||||||||||||||||| ||||||||| | | |||||||||||||||||    
T  20502151 ttttcatatacgctataagctgttttcataagctatcctgaagagcttatg 20502101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 24235803 - 24235738
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| |||||| |||||  ||||| ||||||||||||||||||    
T  24235803 ttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcat 24235738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 37788814 - 37788875
Alignment:
Q  116 ttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||||||||| |||| ||| |||||||||| ||||  |||||||||||||||||    
T  37788814 ttttataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcat 37788875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 1395622 - 1395686
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||| ||||| |  |||||||||    
T  1395622 tatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcat 1395686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 33965608 - 33965518
Alignment:
Q  115 tttttataacaaaagataacataa-gtcaaattattttcatatac--gctataagttgttttcattaccaatcctgaagagcttatggaaa 202  Q
    ||||||||||||||| ||| |||| |||||| | ||||||||||   |||||||| ||||||||| | | ||| |||||||||||||||||    
T  33965608 tttttataacaaaaggtaaaataaagtcaaactgttttcatataaaagctataagatgttttcataagctatcttgaagagcttatggaaa 33965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 23315602 - 23315668
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||| |||||||||| |||||||| ||||| ||| | | || || ||||||||||||||||    
T  23315602 aagtcaaattgttttcatataggctataagatgtttccataagctattctaaagagcttatggaaat 23315668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 27792832 - 27792914
Alignment:
Q  122 aacaaaagataacataag-tcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||||| ||||| ||||| |||||||||||| |||  ||||||||||||| | | ||| || ||||||||| |||||    
T  27792832 aacaaaagataaaataaggtcaaactattttcatataagctgcaagttgttttcataaactatcatgtagagcttatagaaat 27792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 10101596 - 10101531
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| || ||||| |||||||||| | || |||||||||||||    
T  10101596 ttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcat 10101531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 10212521 - 10212456
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| || ||||| |||||||||| | || |||||||||||||    
T  10212521 ttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcat 10212456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 10357383 - 10357448
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| |||| || ||||| |||||||||| | || |||||||||||||    
T  10357383 ttatttctataacaaaagataaaataatgttaaatttttttcatataagatacaagttgttttcat 10357448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 20143875 - 20143920
Alignment:
Q  112 ttatttttataacaaaagataacataagtcaaattattttcatata 157  Q
    |||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  20143875 ttatttctataataaaagataaaataagtcaaactattttcatata 20143920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 23269314 - 23269269
Alignment:
Q  112 ttatttttataacaaaagataacataagtcaaattattttcatata 157  Q
    |||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  23269314 ttatttctataataaaagataaaataagtcaaactattttcatata 23269269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 37689503 - 37689450
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataa 165  Q
    |||||||||||||||||||||  ||| || |||||||||||||||| |||||||    
T  37689503 tatttttataacaaaagataaagtaaagttaaattattttcatataagctataa 37689450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 28779332 - 28779368
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgtttt 173  Q
    |||||||| |||||||||||| |||||||||||||||    
T  28779332 aagtcaaactattttcatataagctataagttgtttt 28779368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 43116547 - 43116483
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| || || |||||  ||||||||||| ||||||||| ||||||||    
T  43116547 tatttctataacaaaagataaaatcaaatcaaacaattttcatataagctataagtcgttttcat 43116483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 48807683 - 48807723
Alignment:
Q  136 taagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||| |||||||||| | ||||||||||||||||||    
T  48807683 taagtcaaactattttcatagaagctataagttgttttcat 48807723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 11513858 - 11513913
Alignment:
Q  122 aacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcat 11513913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 43141847 - 43141913
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||||||||| ||| |||||| |||||||| ||||||||| | | ||||||||||| ||||||||||    
T  43141847 aagtcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaat 43141913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 17952820 - 17952756
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||| |||| ||| |||||||||    
T  17952820 tatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcat 17952756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 22681305 - 22681213
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||| |||||||||||| | || | |||||| |||||||||| |||||||| ||||||||| | | |||||  ||| |||||||||||    
T  22681305 ttatttttaaaacaaaagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaat 22681213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 43635213 - 43635129
Alignment:
Q  119 tataacaaaagataacataagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||| ||||||| || ||||||| || |||||| ||||||||||||||||||| |||| | | ||| |||| |||||||| ||||    
T  43635213 tatatcaaaagagaaaataagtctaaatatttttatatacgctataagttgttctcataagctatcatgaaaagcttatgaaaat 43635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 31740078 - 31740019
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgtt 171  Q
    ||||| |||||| |||||||| |||| |||||| |||||||||||| |||||||||||||    
T  31740078 tatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgtt 31740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3423888 - 3423830
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttg 169  Q
    |||||||| || |||||||||| |||| |||||||||||||||||||  ||||||||||    
T  3423888 ttatttttgtaccaaaagataaaataaagtcaaattattttcatataacctataagttg 3423830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 6993833 - 6993779
Alignment:
Q  123 acaaaagataacataag-tcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||| ||||| ||||||||| |||||||| |||||| |||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcat 6993779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 43199364 - 43199454
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaa 201  Q
    |||||| || |||||||||||| |||| || ||||||| ||| |||| |||||||||||||||||| | | |||||| | |||||| ||||    
T  43199364 ttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaactatcctggacagcttaaggaa 43199454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 6988072 - 6988157
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||| |||| |||||||||||||| ||   | |||||||||||||||| | | ||| ||||||| |||| |||||    
T  6988072 tataacaaaagataaaataaagtcaaattattttcttactagttataagttgttttcataagctatcttgaagagtttatagaaat 6988157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 9878801 - 9878736
Alignment:
Q  113 tatttttataacaaaagataacataag-tcaaattattttcatatacgctataagttgttttcatt 177  Q
    ||||| ||||||||||||||| ||||  ||||| |||||| | ||| |||||||||||||||||||    
T  9878801 tatttctataacaaaagataaaataaactcaaactatttttacatatgctataagttgttttcatt 9878736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 10143122 - 10143187
Alignment:
Q  112 ttatttttataacaaaagataaca-taagtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||||||||||| | ||||||||| | |||| ||||| |||||||||| |||||||    
T  10143122 ttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcat 10143187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 25609747 - 25609808
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgtttt 173  Q
    ||||| ||||| ||||||||| |||| ||||| |||||||| |||| |||||||||||||||    
T  25609747 tatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgtttt 25609808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 28803618 - 28803537
Alignment:
Q  120 ataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatgga 200  Q
    |||||||||||||| |||| |||||| |  ||||||||| |||| ||||||||||| | | | |||||| ||||||||||||    
T  28803618 ataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaactatcctggagagcttatgga 28803537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39983323 - 39983384
Alignment:
Q  142 aaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    |||| ||||||||||| |||||||||||||||||| | | |||||| |||||| ||| ||||    
T  39983323 aaataattttcatataagctataagttgttttcataagctatcctggagagctaatgaaaat 39983384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 23143097 - 23143033
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||| ||||||||||||| || || ||||||| ||||| |||| ||||| ||||||||||||    
T  23143097 tatttttgtaacaaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcat 23143033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 23554887 - 23554823
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||| ||||||||||||| || || ||||||| ||||| |||| ||||| ||||||||||||    
T  23554887 tatttttgtaacaaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcat 23554823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 28933775 - 28933839
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| || || ||||||||||||||| || | ||||| ||||||||||    
T  28933775 tatttatataacaaaagataaaatcaaatcaaattattttcatttaagttataaattgttttcat 28933839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 33944581 - 33944621
Alignment:
Q  137 aagtcaaattattttcatatacgctataagttgttttcatt 177  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  33944581 aagtcaaattgttttcatataagctataaattgttttcatt 33944621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 1837 - 1779
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||| || || ||||||||||||||||||||||||| ||||||    
T  1837 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 1779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 3927 - 3869
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||| || || ||||||||||||||||||||||||| ||||||    
T  3927 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 3869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 11340738 - 11340680
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||| |||| || || ||||||||||||||||||||||||| ||||||    
T  11340738 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 11340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 28660879 - 28660789
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaa 202  Q
    |||||||||||||| |||||| |||| || ||||||||||||||||   ||||| |||||||||| | | ||||| || ||||||||||||    
T  28660879 tatttttataacaatagataaaataaagttaaattattttcatataaattataaattgttttcataaactatccttaaaagcttatggaaa 28660789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 1402947 - 1403011
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||| |||| || ||| |||||||||||| ||||||| ||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcat 1403011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 2027525 - 2027461
Alignment:
Q  113 tatttttataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||  ||||||| |||| ||||    
T  2027525 tatttttataacaaaagataaaataaagtcaaactattttcatataacctataagctgttctcat 2027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4006665 - 4006729
Alignment:
Q  113 tatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||| ||||| |||| |||||||| |||| ||||| ||||||||||||||||||    
T  4006665 tatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcat 4006729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 9668104 - 9668040
Alignment:
Q  113 tatttttataacaaaagataacata-agtcaaattattttcatatacgctataagttgttttcat 176  Q
    ||||| ||||||||||||||||||| |||| |||| |||||||||| |||| || ||||||||||    
T  9668104 tatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcat 9668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 32386670 - 32386591
Alignment:
Q  125 aaaagataacataag-tcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||| ||||| ||||||| |||||||||| | |||| |||||||||||||   |||||| |||||||||| ||||    
T  32386670 aaaagataaaataaggtcaaattgttttcatataaggtatacgttgttttcattagttatcctggagagcttatgaaaat 32386591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 281961 - 281876
Alignment:
Q  119 tataacaaaagataacat-aagtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||||||||||||| || ||||||| || |||||||||| |||||||| ||| ||||| | | |||||  |||||| ||||||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 27595680 - 27595595
Alignment:
Q  119 tataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcattaccaatcctgaagagcttatggaaat 203  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||  |||||||  |||||||  |||| ||| ||||||    
T  27595680 tataataaaagataaaataaagtcaaattattttcatataagctgtaagttaatttcatttgcaatcctagagagtttacggaaat 27595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 10452479 - 10452419
Alignment:
Q  113 tatttttataacaaaagataacataag-tcaaattattttcatatacgctataagttgttt 172  Q
    ||||| |||||||||| |||| ||||  ||||| |||||||||||| ||||||||||||||    
T  10452479 tatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgttt 10452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 27526 - 27591
Alignment:
Q  112 ttatttttataacaaaagataacataa-gtcaaattattttcatatacgctataagttgttttcat 176  Q
    |||||| ||||||| ||||||| |||| |||||||| ||||||||||  |||||||||||||||||    
T  27526 ttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcat 27591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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