View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20455_low_4 (Length: 327)
Name: NF20455_low_4
Description: NF20455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20455_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 25379020 - 25378709
Alignment:
| Q |
1 |
catcaccacttatacctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccctactccaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25379020 |
catcaccacttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccctactccaa |
25378921 |
T |
|
| Q |
101 |
gaaaccctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378920 |
gaaaccctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaat |
25378821 |
T |
|
| Q |
201 |
ccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttcgacacctatgatgaattaccttaattctgaccactaccttcctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378820 |
ccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttccacacctatgatgaattaccttaattctgaccactaccttcctc |
25378721 |
T |
|
| Q |
301 |
caatgctgaatg |
312 |
Q |
| |
|
|||||||||||| |
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| T |
25378720 |
caatgctgaatg |
25378709 |
T |
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