View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_1 (Length: 828)
Name: NF20456_high_1
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-160; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 250 - 777
Target Start/End: Original strand, 5282001 - 5282543
Alignment:
| Q |
250 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaacttgtagaatccacacaatactatcaaggac----------------- |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||| ||| |
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| T |
5282001 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactcgtagaatc-acataacactatcaatgacactagctaacatgtgac |
5282099 |
T |
|
| Q |
333 |
---tcatatgcaaggcaaatattctgcaccaccctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctc |
429 |
Q |
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||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5282100 |
gactcatatgcaagccaaatattctgcaccaccgtctgaaaaatctgatgtggtataaacaatgttgcctacaacaaacaagtttttgatccaatatctc |
5282199 |
T |
|
| Q |
430 |
tgaaaaacatcccccagctctcaaaaagatctcggatgtacacatttggaaaaaccatgaattttgtgtcaaatagaagtacacttacgagtgatttatg |
529 |
Q |
| |
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|||||| ||||| ||| ||||||| |||| |||||| ||||| |||| |||||||||||||||||||| |||||| ||||||||| ||||| |||||||| |
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| T |
5282200 |
tgaaaagcatcctccacctctcaagaagagctcggacgtacaaatttagaaaaaccatgaattttgtg-caaatacaagtacactaacgagcgatttatg |
5282298 |
T |
|
| Q |
530 |
ttgtccggaagcgcacttctgtaaacttcggttttcttagcagcgacggtga-gggaaaaatagtgcctttagttcactcaggccggccaacccaaaatt |
628 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||||| |||||||||||| ||||||||||||||| |
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| T |
5282299 |
ttgtccggaagcacacttctttaaacttcggttttcttagcaacgaaggtgaggggaaaattagtgctcttagttcactca----ggccaacccaaaatt |
5282394 |
T |
|
| Q |
629 |
atgaaatcagattagtcaaccactccagctggctgctagataattaaaaacaaatgttgtgataaagttgttcttggaatccatatatcctataatattt |
728 |
Q |
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||||||||||| | ||||| ||||| ||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||| |
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| T |
5282395 |
atgaaatcagaccactcaactactcctgctggctgcaagatagttaaaaacaaatgttgtgataaatttattcttggaatccatatatcttatattattt |
5282494 |
T |
|
| Q |
729 |
aggaatatagaagtttgctaagcaaggttgaaaatagttatgtccaaat |
777 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5282495 |
aggactacagaagtttgctaagcaaggttgaaaatagttatgtccaaat |
5282543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 330 - 710
Target Start/End: Original strand, 5254995 - 5255381
Alignment:
| Q |
330 |
gactcatatgcaaggcaaatattctgcacc----accctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaata |
425 |
Q |
| |
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|||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5254995 |
gactcatatgcaagccaactattctgcaaattaaaccctttgaaaaatctgatgtggtataaacaatgttgcttacaacaaacaagtttttgatccaata |
5255094 |
T |
|
| Q |
426 |
tctctgaaaaacatcccccagctctcaaaaagatctcggatgtacacatttggaaaaaccatgaattttgtgtcaaatagaagtacacttacgagtgatt |
525 |
Q |
| |
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|||||||||| ||||||||| | ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || |
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| T |
5255095 |
tctctgaaaagcatcccccacccctcaagaagatctcggatgtagacatttggaaaaaccacaaattttgtgtcaaatagaagt--acttacgagcaata |
5255192 |
T |
|
| Q |
526 |
tatgttgtccggaagcgcacttctgtaaacttcggttttcttagcagcgacggtga-gggaaaaatagtgc-------ctttagttcactcaggccggcc |
617 |
Q |
| |
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||||||||| |||||| |||| ||||||||||| ||||| ||||||| || ||||| ||||||||||| || | |||||||||||| |||| |
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| T |
5255193 |
tatgttgtctggaagcacactcctgtaaacttctgtttttttagcagtgagggtgaggggaaaaatagggcccttactccttagttcactca----ggcc |
5255288 |
T |
|
| Q |
618 |
aacccaaaattatgaaatcagattagtcaaccactccagctggctgctagataattaaaaacaaatgttgtgataaagttgttcttggaatcc |
710 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||| ||| |||| |
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| T |
5255289 |
aacccaaaattatgaaatcagaccactcaaccactcctgctggctgcaagattgttaaaaataaatgttgtgataaagttgttcatggcatcc |
5255381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 5281782 - 5281977
Alignment:
| Q |
8 |
aataaagttgattagtagatgtgacaataataaaatgcctctgttttgctttgatcttttaaaccttattaatgtttagcttggaaattnnnnnnnnnnn |
107 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | |||| | |||||||||| || |||| |
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| T |
5281782 |
aataaagttgattagtagacgtaacaataataaaatgcctctgttttgatttgatcttttacatcttagtcatgtttagctcggcaattaaaaaaattta |
5281881 |
T |
|
| Q |
108 |
nngactaaattcaaattaagttttgttaatgtaagtgaaaaataaaattcgttagtagcgagaccaaaaatacaattagatacattttccatatcata |
205 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5281882 |
--gactaaattcaaattaatttttgttaatgtaagtgaaaaataaaatacgttattagcgagaccaaaaatacaattaaatacattttccatatcata |
5281977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 5254852 - 5254954
Alignment:
| Q |
203 |
ataggaactgctgtacgaaggtg--catgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatga |
300 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5254852 |
ataggaactgttgtacgaaggtgtgcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatga |
5254951 |
T |
|
| Q |
301 |
act |
303 |
Q |
| |
|
||| |
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|
| T |
5254952 |
act |
5254954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 5180321 - 5180399
Alignment:
| Q |
225 |
gcatgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaact |
303 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5180321 |
gcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcagagacatgtgaatgaact |
5180399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 5254716 - 5254780
Alignment:
| Q |
19 |
ttagtagatgtgacaataataaaatgcctctgttttgctttgatcttttaaaccttattaatgtttagct |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
5254716 |
ttagtagatgtgacaataataaaatgcctctgt-----tttgatcttttaaatcttactaatgtttagct |
5254780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 5440160 - 5440061
Alignment:
| Q |
335 |
atatgcaaggcaaatattctgcaccaccctttgaaaaatctgatg---tggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctctg |
431 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||| | | |||||| |||||||||||||| |||||| |
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|
| T |
5440160 |
atatgcaagccaaagtttctgcaccacccactgaaaaatctgatgtggtggtagaaacaatgatgtattaagcaaacatgtttttgatccaatgtctctg |
5440061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 777
Target Start/End: Complemental strand, 5449212 - 5449102
Alignment:
| Q |
666 |
agataattaaaaacaaatgttgtgataaagttgttcttggaatccatatatcctataatatttaggaatatagaagtttgctaagcaaggttgaaaatag |
765 |
Q |
| |
|
|||| ||||||| |||||||| |||||| || ||| ||| |||||| ||| |||| |||||||||||| | ||||||||||||| ||||||||| || |
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|
| T |
5449212 |
agatgattaaaaccaaatgttc-gataaaattcttcatggcatccatgtattgtatattatttaggaatacatcagtttgctaagcatggttgaaaacag |
5449114 |
T |
|
| Q |
766 |
ttatgtccaaat |
777 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
5449113 |
ttctgttcaaat |
5449102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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