View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_13 (Length: 506)
Name: NF20456_high_13
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 54014976 - 54014496
Alignment:
| Q |
19 |
agaaccctcatactccaacctcagctggtggtgcattcatttgctcgtactatgtggtctaagaactctactacacgtgttttggagttcttatagtaac |
118 |
Q |
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| T |
54014976 |
agaaccctcatactccaacctcagctggtggtgcattcatttgctcgtactatgtggtctaagaactctactacacgtgttttggagttcttatagtaac |
54014877 |
T |
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| Q |
119 |
atgctttttcttactagaaatcgaaggattcttcaacaaggtgttgatttcaagcagattgacaaagaatgggactggtaattcaacattttatcattta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54014876 |
atgctttttcttactagaaatcgaaggattcttcaacaaggtgttgatttcaagcagattgacaaagaatgggactggtaattcaacattttatcattta |
54014777 |
T |
|
| Q |
219 |
acaaagtatattatatatgctgaaaattatttgttgattattgatttatatcataattttttgaaacagggacaatttcttgattcttcaaacactcgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54014776 |
acaaagtatattatatatgctgaaaattatttgttgattattgatttatatcataattttttgaaacagggacaatttcttgattcttcaaacacttgtt |
54014677 |
T |
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| Q |
319 |
gctaccttagtttcctatattttcccatttcttcagcatcttcctctatggaatataaaaggtattattgttgccatgattctacatgtgggagtttcag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54014676 |
gctaccttagtttcctatattttcccatttcttcagcatcttcctctatggaatgtaaaaggtattattgttgctatgattctacatgtgggagtttcag |
54014577 |
T |
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| Q |
419 |
agccactttattattgggtacataagaaatttcatggagattatcttttcaaaaactatcactctcttcatcattcatctc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54014576 |
agccactttattattgggtacataagaaatttcatggagattatcttttcaaaaactatcactctcttcatcattcatctc |
54014496 |
T |
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